[R-pkg-team] Bug#1069352: r-cran-seuratobject: FTBFS on arm64: dpkg-gencontrol: error: parsing package 'r-cran-seuratobject' Depends field: r-api-4.0, r-base-core (>= ii r-base-core 4.3.3-3+b1 arm64 GNU R core of statistical computation and graphics system) , , r-cran-sp (>= 1.5.0), r-cran-future, r-cran-future.apply, r-cran-matrix (>= 1.6-5-1), r-cran-progressr, r-cran-rcpp (>= 1.0.5), r-cran-rlang (>= 0.4.7), r-cran-spam, r-cran-lifecycle, r-cran-generics, r-cran-rcpp, r-cran-rcppeigen,

[Lucas Nussbaum]

Source: r-cran-seuratobject
Version: 5.0.1-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20240420 ftbfs-trixie ftbfs-t64-arm64

Hi,

During a rebuild of all packages in sid, your package failed to build
on arm64.


Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> rmbversion=`dpkg -l r-cran-matrix | grep 'ii' | sed 's/^.*r-cran-matrix[[:space:]]\+\([0-9.-]\+\)[[:space:]]\+.*/\1/'`; \
> sed -i "s/r-cran-matrix[^,]*/r-cran-matrix (>= ${rmbversion})/" debian/*substvars
> rversion=`dpkg -l r-base-core | grep 'ii' | sed 's/^.*r-base-core[[:space:]]\+\([0-9.-]\+\)-[0-9]\+[[:space:]]\+.*/\1/'`; \
> sed -i "s/\(r-api-[0-9.]\+\),/& r-base-core (>= ${rversion})/" debian/*substvars
> dh_gencontrol
> dpkg-gencontrol: warning: can't parse dependency r-base-core (>= ii  r-base-core    4.3.3-3+b1   arm64        GNU R core of statistical computation and graphics system)
> dpkg-gencontrol: error: parsing package 'r-cran-seuratobject' Depends field: r-api-4.0, r-base-core (>= ii  r-base-core    4.3.3-3+b1   arm64        GNU R core of statistical computation and graphics system) , , r-cran-sp (>= 1.5.0), r-cran-future, r-cran-future.apply, r-cran-matrix (>= 1.6-5-1), r-cran-progressr, r-cran-rcpp (>= 1.0.5), r-cran-rlang (>= 0.4.7), r-cran-spam, r-cran-lifecycle, r-cran-generics, r-cran-rcpp, r-cran-rcppeigen,
>         libc6 (>= 2.17), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1),
>         
> dh_gencontrol: error: dh_gencontrol: error: dpkg-gencontrol -pr-cran-seuratobject -ldebian/changelog -Tdebian/r-cran-seuratobject.substvars -cdebian/control -Pdebian/.debhelper/r-cran-seuratobject/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=r-cran-seuratobject-dbgsym "-DDepends=r-cran-seuratobject (= \${binary:Version})" "-DDescription=debug symbols for r-cran-seuratobject" -DBuild-Ids=4f1c07f630f9d500c3cba6813ed40318efbe3d1c -DSection=debug -UMulti-Arch -UReplaces -UBreaks returned exit code 25
> 
> dh_gencontrol: error: Aborting due to earlier error
> make[1]: *** [debian/rules:9: override_dh_gencontrol] Error 25


The full build log is available from:
http://qa-logs.debian.net/2024/04/20/r-cran-seuratobject_5.0.1-1_unstable-arm64.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240420;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240420&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.