[R-pkg-team] Bug#1079126: RM: r-bioc-genomicranges [armel armhf i386] -- ROM; Upstream no longer supports 32-bit systems

[Michael R. Crusoe]

Package: ftp.debian.org
Severity: normal
X-Debbugs-Cc: r-bioc-genomicranges at packages.debian.org, debian-r at lists.debian.org, crusoe at debian.org
Control: block -1 by 1079062
Control: block -1 by 1078962
Control: block -1 by 1079056
Control: block 1076843 by -1
Tags: moreinfo
Control: affects -1 + src:r-bioc-genomicranges
User: ftp.debian.org at packages.debian.org
Usertags: remove

Dear FTP Team,

As part of the Bioconductor 3.19 transition, the Debian R team agreed [0] to remove builds for 32-bit architectures (where possible) in line with upstream's cessation of support for 32-bit systems.

Here is the 29th such removal request, this time for r-bioc-genomicranges.`dak` complains about various build and runtime dependencies being broken, all of which I've already filled 32-bit removal requests for; and for which I've set to block this bug.

$ ssh mirror.ftp-master.debian.org "dak rm --architecture=armel,armhf,i386 --no-arch-all-rdeps --binary-only --partial --rdep-check --no-action r-bioc-genomicranges"
Will remove the following packages from unstable:

r-bioc-genomicranges | 1.54.1+dfsg-1 | armel, armhf, i386

Maintainer: Debian R Packages Maintainers <r-pkg-team at alioth-lists.debian.net>

------------------- Reason -------------------

----------------------------------------------

Checking reverse dependencies...
# Broken Depends:
r-bioc-deseq2: r-bioc-deseq2
r-bioc-dropletutils: r-bioc-dropletutils
r-bioc-scuttle: r-bioc-scuttle

# Broken Build-Depends:
r-bioc-alabaster.ranges: r-bioc-genomicranges (1.56.1 >=)
r-bioc-alabaster.se: r-bioc-genomicranges (1.56.1 >=)
r-bioc-annotationfilter: r-bioc-genomicranges (1.56.1 >=)
r-bioc-ballgown: r-bioc-genomicranges (1.56.1 >=)
r-bioc-biovizbase: r-bioc-genomicranges (1.56.1 >=)
r-bioc-bsgenome: r-bioc-genomicranges (1.56.1 >=)
r-bioc-bsseq: r-bioc-genomicranges (1.56.1 >=)
r-bioc-cner: r-bioc-genomicranges (1.56.1 >=)
r-bioc-degnorm: r-bioc-genomicranges (1.56.1 >=)
r-bioc-deseq2: r-bioc-genomicranges (1.56.1 >=)
r-bioc-dexseq: r-bioc-genomicranges (1.56.1 >=)
r-bioc-drimseq: r-bioc-genomicranges (1.56.1 >=)
r-bioc-dropletutils: r-bioc-genomicranges (1.56.1 >=)
r-bioc-edaseq: r-bioc-genomicranges (1.56.1 >=)
r-bioc-ensembldb: r-bioc-genomicranges (1.56.1 >=)
r-bioc-fishpond: r-bioc-genomicranges (1.56.1 >=)
r-bioc-genomicalignments: r-bioc-genomicranges (1.56.1 >=)
r-bioc-genomicfeatures: r-bioc-genomicranges (1.56.1 >=)
r-bioc-genomicfiles: r-bioc-genomicranges (1.56.1 >=)
r-bioc-ggbio: r-bioc-genomicranges (1.56.1 >=)
r-bioc-grohmm: r-bioc-genomicranges (1.56.1 >=)
r-bioc-gviz: r-bioc-genomicranges (1.56.1 >=)
r-bioc-isoformswitchanalyzer: r-bioc-genomicranges (1.56.1 >=)
r-bioc-megadepth: r-bioc-genomicranges
r-bioc-multiassayexperiment: r-bioc-genomicranges (1.56.1 >=)
r-bioc-mutationalpatterns: r-bioc-genomicranges (1.56.1 >=)
r-bioc-oligoclasses: r-bioc-genomicranges (1.56.1 >=)
r-bioc-organismdbi: r-bioc-genomicranges (1.56.1 >=)
r-bioc-purecn: r-bioc-genomicranges (1.56.1 >=)
r-bioc-qtlizer: r-bioc-genomicranges
r-bioc-rsamtools: r-bioc-genomicranges (1.56.1 >=)
r-bioc-rtracklayer: r-bioc-genomicranges (1.56.1 >=)
r-bioc-scrnaseq: r-bioc-genomicranges (1.56.1 >=)
r-bioc-scuttle: r-bioc-genomicranges (1.56.1 >=)
r-bioc-shortread: r-bioc-genomicranges (1.56.1 >=)
r-bioc-singlecellexperiment: r-bioc-genomicranges (1.56.1 >=)
r-bioc-structuralvariantannotation: r-bioc-genomicranges (1.56.1 >=)
r-bioc-summarizedexperiment: r-bioc-genomicranges (1.56.1 >=)
r-bioc-tcgabiolinks: r-bioc-genomicranges
r-bioc-tfbstools: r-bioc-genomicranges (1.56.1 >=)
r-bioc-titancna: r-bioc-genomicranges (1.56.1 >=)
r-bioc-txdbmaker: r-bioc-genomicranges (1.56.1 >=)
r-bioc-tximeta: r-bioc-genomicranges (1.56.1 >=)
r-bioc-variantannotation: r-bioc-genomicranges (1.56.1 >=)
r-other-ascat: r-bioc-genomicranges

Dependency problem found.

---

Thanks!

[0] https://lists.debian.org/debian-r/2024/07/msg00033.html https://lists.debian.org/debian-r/2024/07/msg00035.html https://lists.debian.org/debian-r/2024/07/msg00045.html

-- 
Michael R. Crusoe
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