[R-pkg-team] Bug#1091026: r-bioc-structuralvariantannotation: FTBFS: build-dependency not installable: r-api-bioc-3.20

[Lucas Nussbaum]

Source: r-bioc-structuralvariantannotation
Version: 1.20.0+ds-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20241222 ftbfs-trixie

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> +------------------------------------------------------------------------------+
> | Install package build dependencies                                           |
> +------------------------------------------------------------------------------+
> 
> 
> Setup apt archive
> -----------------
> 
> Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-genomicranges (>= 1.56.1), r-bioc-rtracklayer (>= 1.64.0), r-bioc-variantannotation (>= 1.50.0), r-bioc-biocgenerics (>= 0.50.0), r-cran-assertthat, r-bioc-biostrings (>= 2.72.1), r-bioc-pwalign (>= 1.0.0-2~0exp1), r-cran-stringr, r-cran-dplyr, r-cran-rlang, r-bioc-genomicfeatures (>= 1.56.0), r-bioc-iranges (>= 2.38.1), r-bioc-s4vectors (>= 0.42.1), r-bioc-summarizedexperiment (>= 1.34.0), r-bioc-genomeinfodb (>= 1.40.1), build-essential, fakeroot
> Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-genomicranges (>= 1.56.1), r-bioc-rtracklayer (>= 1.64.0), r-bioc-variantannotation (>= 1.50.0), r-bioc-biocgenerics (>= 0.50.0), r-cran-assertthat, r-bioc-biostrings (>= 2.72.1), r-bioc-pwalign (>= 1.0.0-2~0exp1), r-cran-stringr, r-cran-dplyr, r-cran-rlang, r-bioc-genomicfeatures (>= 1.56.0), r-bioc-iranges (>= 2.38.1), r-bioc-s4vectors (>= 0.42.1), r-bioc-summarizedexperiment (>= 1.34.0), r-bioc-genomeinfodb (>= 1.40.1), build-essential, fakeroot
> dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
> Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
> Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
> Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
> Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1069 B]
> Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1102 B]
> Fetched 2786 B in 0s (0 B/s)
> Reading package lists...
> Reading package lists...
> 
> Install main build dependencies (apt-based resolver)
> ----------------------------------------------------
> 
> Installing build dependencies
> Reading package lists...
> Building dependency tree...
> Some packages could not be installed. This may mean that you have
> requested an impossible situation or if you are using the unstable
> distribution that some required packages have not yet been created
> or been moved out of Incoming.
> The following information may help to resolve the situation:
> 
> The following packages have unmet dependencies:
>  r-bioc-biocstyle : Depends: r-api-bioc-3.20 but it is not installable
> E: Unable to correct problems, you have held broken packages.
> apt-get failed.


The full build log is available from:
http://qa-logs.debian.net/2024/12/22/r-bioc-structuralvariantannotation_1.20.0+ds-1_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20241222;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20241222&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.