[R-pkg-team] Bug#1058613: Source archive of DSS missing

[Kern, Lori]

DSS is unavailable because it has yet to build this release.  The DSS maintainers have been notified multiple times but have yet to fix the package; DSS is currently at risk of deprecation if it is not fixed.
https://bioconductor.org/checkResults/release/bioc-LATEST/DSS/

Per the build report the solution is very simple. DSS needs to add the needed dependency edgeR to the list of Suggests package in the DESCRIPTION and push a valid version bump.




Lori Shepherd - Kern

Bioconductor Core Team

Roswell Park Comprehensive Cancer Center

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Andreas Tille <andreas at an3as.eu>
Sent: Tuesday, January 9, 2024 10:32 AM
To: Hao Wu <hao.wu at emory.edu>; Hao Feng <hxf155 at case.edu>
Cc: 1058613 at bugs.debian.org <1058613 at bugs.debian.org>; Debian R <debian-r at lists.debian.org>; Bioconductor Package Maintainer <maintainer at bioconductor.org>
Subject: Re: Source archive of DSS missing

Hi again,

putting Bioconductor Package Maintainer in CC since I can not yet find
the source archive of DSS 2.50.0 neither at

   https://secure-web.cisco.com/1IXs1DXRx2Y9dsRzzvLX84yK4Ym9eNeMVhLE8Z1rSs1XEmkvc9TlBtwJTB7DOPYrI0g0KgeG9hBwAaYvDvLqRK1ebqhCu939zH8_Ck55gAkqlcowiWK7FEtyGnoy96fpqFd5u8Kq4cTsmPqXSGOGVe3Ee8qt1XYN4fraNRyxTAewqnC9SkVz0R1nQdaUPBhbBNAJo5E-R9em72gaphy1VOuwNul219-EPQug_O_SL0CFbt7Twf2Xgmt2U8Y0Zml2cIDGiSRYkPfiQxbJMohb-19idtd9WZ813UCm9Twqayf_KuxiqzTKEcPRDqbpKVcTT/https%3A%2F%2Fbioconductor.org%2Fpackages%2Frelease%2Fbioc%2Fhtml%2FDSS.html

We need the source code to update the Debian package.

Kind regards
   Andreas.

Am Tue, Dec 12, 2023 at 03:09:29PM +0100 schrieb Andreas Tille:
> Hi,
>
> could someone please have a look at the source download?
>
> Thank you
>    Andreas.
>
> Am Fri, Dec 08, 2023 at 04:04:27PM +0100 schrieb Andreas Tille:
> > Hi,
> >
> > when looking at
> >
> >     https://secure-web.cisco.com/1IXs1DXRx2Y9dsRzzvLX84yK4Ym9eNeMVhLE8Z1rSs1XEmkvc9TlBtwJTB7DOPYrI0g0KgeG9hBwAaYvDvLqRK1ebqhCu939zH8_Ck55gAkqlcowiWK7FEtyGnoy96fpqFd5u8Kq4cTsmPqXSGOGVe3Ee8qt1XYN4fraNRyxTAewqnC9SkVz0R1nQdaUPBhbBNAJo5E-R9em72gaphy1VOuwNul219-EPQug_O_SL0CFbt7Twf2Xgmt2U8Y0Zml2cIDGiSRYkPfiQxbJMohb-19idtd9WZ813UCm9Twqayf_KuxiqzTKEcPRDqbpKVcTT/https%3A%2F%2Fbioconductor.org%2Fpackages%2Frelease%2Fbioc%2Fhtml%2FDSS.html
> >
> > and following the link "Source Archive" at bottom of the page linking
> > to
> >     https://secure-web.cisco.com/15BklqjFB-NkLwrDhwI3-Chm5lIsfsZx3HGG4qR9PglFPGp8MDxMcMhd53rhclhE1eG5z0mpDqljZ8aI2luxCjYaJRC5FmDMfUoyjm_D_a1Y8WRQ3aLjtPntuNWsRSuvmnS-UMkwWWHSzG6ngdm5sMDHLC_xudenk0l3XKkHs8-NVh47VDo-25g67Oham6vEDGZhTAbePruF86hxZG2Gi_Gp8ozOtWHVxTIhkx0AbGXQUCcnK-VqaVSr0Hccm4ihUo-Nd4x3ZeSe7uwT0gJcnU-3IJPz4S7eH0bawwmQLxYdOuJPQUXaev51clpMOkXyT/https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.18%2Fbioc%2Fsrc%2Fcontrib%2FArchive%2FDSS%2F
> >
> > I can only see
> >
> >    Page Not Found
> >    The page you were looking for was not found.
> >
> > I'm trying to upgrade the Debian package of DSS to its latest version
> > and would need the source tarball which can be usually downloaded from
> > the "Source Archive" link.
> >
> > Kind regards
> >     Andreas.
> >
> > --
> > http://secure-web.cisco.com/1Y3FjQ3OXq4yJhUvLN0ecxalWPMsbdxBN0HymctCBHh1bnToxtrtowlogQtON_22uKVOTc9pavLt0rb0ByGDyVDsoLkxqCPFWhTWCXlKWTD8TxQdHXMUmwZJPCRQNKU0ZsT-cpAnDDZSBxu5NvHH95o0sX0kLdbDho808f7jP7DV1pyCo6ja1UwB-M6ThjD4LsGhzd2Szqxr51cRJ_M159zxRh3o_7tYS7EegGzTkKSqFefWg2RNv2f31tfktcgx-gx6EoLZjJhl7lsZvPFlRt_8yNpODPX7iehx2QrdSs7ZKPNIbbHWE-iEtxeqpBnQV/http%3A%2F%2Ffam-tille.de
>
> --
> http://secure-web.cisco.com/1Y3FjQ3OXq4yJhUvLN0ecxalWPMsbdxBN0HymctCBHh1bnToxtrtowlogQtON_22uKVOTc9pavLt0rb0ByGDyVDsoLkxqCPFWhTWCXlKWTD8TxQdHXMUmwZJPCRQNKU0ZsT-cpAnDDZSBxu5NvHH95o0sX0kLdbDho808f7jP7DV1pyCo6ja1UwB-M6ThjD4LsGhzd2Szqxr51cRJ_M159zxRh3o_7tYS7EegGzTkKSqFefWg2RNv2f31tfktcgx-gx6EoLZjJhl7lsZvPFlRt_8yNpODPX7iehx2QrdSs7ZKPNIbbHWE-iEtxeqpBnQV/http%3A%2F%2Ffam-tille.de
>
>

--
http://secure-web.cisco.com/1Y3FjQ3OXq4yJhUvLN0ecxalWPMsbdxBN0HymctCBHh1bnToxtrtowlogQtON_22uKVOTc9pavLt0rb0ByGDyVDsoLkxqCPFWhTWCXlKWTD8TxQdHXMUmwZJPCRQNKU0ZsT-cpAnDDZSBxu5NvHH95o0sX0kLdbDho808f7jP7DV1pyCo6ja1UwB-M6ThjD4LsGhzd2Szqxr51cRJ_M159zxRh3o_7tYS7EegGzTkKSqFefWg2RNv2f31tfktcgx-gx6EoLZjJhl7lsZvPFlRt_8yNpODPX7iehx2QrdSs7ZKPNIbbHWE-iEtxeqpBnQV/http%3A%2F%2Ffam-tille.de



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