[R-pkg-team] Bug#1061981: ITP: r-bioc-decontam -- identify contaminants in marker-gene and metagenomics sequencing sata

Andreas Tille tille at debian.org
Tue Jan 30 16:44:11 GMT 2024


Package: wnpp
Severity: wishlist

Subject: ITP: r-bioc-decontam -- identify contaminants in marker-gene and metagenomics sequencing sata
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist

* Package name    : r-bioc-decontam
  Version         : 1.22.0
  Upstream Author : Benjamin Callahan,
* URL             : https://bioconductor.org/packages/decontam/
* License         : Artistic-2.0
  Programming Lang: GNU R
  Description     : identify contaminants in marker-gene and metagenomics sequencing sata
 Simple statistical identification of contaminating sequence features in
 marker-gene or metagenomics data. Works on any kind of feature derived from
 environmental sequencing data (e.g. ASVs, OTUs, taxonomic groups, MAGs,...).
 Requires DNA quantitation data or sequenced negative control samples.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-bioc-decontam



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