[R-pkg-team] Bug#1070841: r-bioc-iranges: autopkgtest regression with r-base 4.4.0

[Dirk Eddelbuettel]

On 10 May 2024 at 10:58, Graham Inggs wrote:
| Source: r-bioc-iranges
| Version: 2.36.0-1
| Severity: serious
| X-Debbugs-Cc: Dirk Eddelbuettel <edd at debian.org>
| User: debian-ci at lists.debian.org
| Usertags: regression
| 
| Hi Maintainer
| 
| r-bioc-iranges' autopkgtest regresses when tested with r-base 4.4.0
| [1].  I've copied what I hope is the relevant part of the log below.

FYI, I am not the maintainer of r-bioc-iranges.

As you likely know, BioConductor aligns releases with R releases at is now at
release 3.19 for which this package is at version 2.38.0. I suggest the
maintainer look into upgrading BioConductor to 3.19.

Dirk

| 
| Regards
| Graham
| 
| 
| [1] https://ci.debian.net/packages/r/r-bioc-iranges/testing/amd64/
| 
| 
| 194s ***********************************************
| 194s Number of test functions: 98
| 194s Number of errors: 1
| 194s Number of failures: 0
| 194s
| 194s
| 194s 1 Test Suite :
| 194s IRanges RUnit Tests - 98 test functions, 1 error, 0 failures
| 194s ERROR in test_AtomicList_numerical: Error in FUN(X[[i]], ...) :
| is.atomic(y) is not TRUE
| 194s
| 194s Test files with failing tests
| 194s
| 194s test_AtomicList-utils.R
| 194s test_AtomicList_numerical
| 194s
| 194s
| 194s Warning messages:
| 194s 1: In recycleListElements(e1, en) :
| 194s Some element lengths are not multiples of their corresponding
| element length in e1
| 194s 2: In x + y :
| 194s longer object length is not a multiple of shorter object length
| 194s 3: In recycleListElements(e1, en) :
| 194s Some element lengths are not multiples of their corresponding
| element length in e1
| 194s 4: In x + y :
| 194s longer object length is not a multiple of shorter object length
| 194s Execution halted

-- 
dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org