[R-pkg-team] Bug#1103227: Bug#1103227: [reply ] r-bioc-grohmm: FTBFS: DecayAlgorithm.c:94:15: error: expected identifier or '(' before 'false'

[Charles Plessy]

Le Thu, Apr 17, 2025 at 01:37:01PM +0800, liwenjun a écrit :
> 
> I founded a commit on the upstream for fixing this problem:
> 
> Bioconductor Code: groHMM <https://code.bioconductor.org/browse/groHMM/commit/261791bdd2802badced2ba6dc1f0bdddd07a85df>
> 
> Or you might prefer to upgrade the major version to their lastest release 1.42.0.

Thanks liwenjun,

can you propose a patch based on the upstream commit?  Do you have write access
to our Salsa repositories?

I figured out that we can not directly use the new version because our
toolchain detects it belongs to BioC 3.21 and intentionally adds a virtual
dependency that prevents the package from co-existing with BioC 3.20 packages.
It's easy to workaround with a patch, but in that case patching the current
version in Debian is as easy and more conservative.

Cheers,

Charles

-- 
Charles Plessy                         Nagahama, Yomitan, Okinawa, Japan
Debian Med packaging team         http://www.debian.org/devel/debian-med
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