[R-pkg-team] Bug#1101251: r-bioc-ihw: FTBFS: /usr/lib/R/site-library/lpsymphony/libs/lpsymphony.so: undefined symbol: _Z17sym_set_dbl_paramP15SYM_ENVIRONMENTPKcd

[Santiago Vila]

Package: src:r-bioc-ihw
Version: 1.34.0+dfsg-2
Severity: serious
Tags: ftbfs trixie sid

Dear maintainer:

During a rebuild of all packages in unstable, your package failed to build:

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary
dh binary --buildsystem R
   dh_update_autotools_config -O--buildsystem=R
   dh_autoreconf -O--buildsystem=R
   dh_auto_configure -O--buildsystem=R
   dh_auto_build -O--buildsystem=R
   dh_auto_test -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=R
   dh_prep -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-ihw/ -O--buildsystem=R
I: R Package: IHW Version: 1.34.0
I: Building using R version 4.4.3-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Sat, 11 Jan 2025 22:03:36 +0100
	mkdir -p /<<BUILDDIR>>/r-bioc-ihw-1.34.0\+dfsg/debian/r-bioc-ihw/usr/lib/R/site-library
	R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-ihw-1.34.0\+dfsg/debian/r-bioc-ihw/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 11 Jan 2025 22:03:36 +0100'"
* installing *source* package ‘IHW’ ...
file ‘inst/doc/introduction_to_ihw.html’ is missing
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared object '/usr/lib/R/site-library/lpsymphony/libs/lpsymphony.so':
  /usr/lib/R/site-library/lpsymphony/libs/lpsymphony.so: undefined symbol: _Z17sym_set_dbl_paramP15SYM_ENVIRONMENTPKcd
Calls: <Anonymous> ... asNamespace -> loadNamespace -> library.dynam -> dyn.load
Execution halted
ERROR: lazy loading failed for package ‘IHW’
* removing ‘/<<PKGBUILDDIR>>/debian/r-bioc-ihw/usr/lib/R/site-library/IHW’
dh_auto_install: error: R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-ihw-1.34.0\+dfsg/debian/r-bioc-ihw/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 11 Jan 2025 22:03:36 +0100'" returned exit code 1
make: *** [debian/rules:4: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------

The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202503/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:r-bioc-ihw, so that this is still
visible in the BTS web page for this package.

Thanks.