[R-pkg-team] Bug#1114891: r-cran-pkgdown: autopkgtest needs update for new version of node-jquery
Paul Gevers
elbrus at debian.org
Thu Sep 11 11:31:56 BST 2025
Source: r-cran-pkgdown
Version: 2.1.1-2
Severity: serious
X-Debbugs-CC: node-jquery at packages.debian.org
Tags: sid trixie
User: debian-ci at lists.debian.org
Usertags: needs-update
Control: affects -1 src:node-jquery
Dear maintainer(s),
With a recent upload of node-jquery the autopkgtest of r-cran-pkgdown
fails in testing when that autopkgtest is run with the binary packages
of node-jquery from unstable. It passes when run with only packages from
testing. In tabular form:
pass fail
node-jquery from testing 3.7.1+dfsg+~3.5.33-1
r-cran-pkgdown from testing 2.1.1-2
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of node-jquery to
testing [1]. Of course, node-jquery shouldn't just break your
autopkgtest (or even worse, your package), but it seems to me that the
change in node-jquery was intended and your package needs to update to
the new situation.
If this is a real problem in your package (and not only in your
autopkgtest), the right binary package(s) from node-jquery should really
add a versioned Breaks on the unfixed version of (one of your)
package(s). Note: the Breaks is nice even if the issue is only in the
autopkgtest as it helps the migration software to figure out the right
versions to combine in the tests.
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=node-jquery
https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-pkgdown/64413608/log.gz
63s BEGIN TEST testthat.R
63s 63s R version 4.5.1 (2025-06-13) -- "Great Square Root"
63s Copyright (C) 2025 The R Foundation for Statistical Computing
63s Platform: x86_64-pc-linux-gnu
63s 63s R is free software and comes with ABSOLUTELY NO WARRANTY.
63s You are welcome to redistribute it under certain conditions.
63s Type 'license()' or 'licence()' for distribution details.
63s 63s R is a collaborative project with many contributors.
63s Type 'contributors()' for more information and
63s 'citation()' on how to cite R or R packages in publications.
63s 63s Type 'demo()' for some demos, 'help()' for on-line help, or
63s 'help.start()' for an HTML browser interface to help.
63s Type 'q()' to quit R.
63s 63s > library(testthat)
63s > library(pkgdown)
64s > 64s > test_check("pkgdown")
64s Starting 2 test processes
110s [ FAIL 13 | WARN 3 | SKIP 132 | PASS 661 ]
110s 110s ══ Skipped tests (132)
═════════════════════════════════════════════════════════
112s • diffviewer is not packaged in Debian (1):
'test-build-article.R:325:3'
112s • On CRAN (123): 'test-build-reference.R:3:3',
'test-build-reference.R:104:3',
112s 'test-build-articles.R:14:3', 'test-build-articles.R:29:3',
112s 'test-build-articles.R:57:3', 'test-build-articles.R:79:3',
112s 'test-build-favicons.R:4:3', 'test-build-favicons.R:16:3',
112s 'test-build-footer.R:12:3', 'test-build-footer.R:68:3',
112s 'test-build-github.R:5:3', 'test-build-home-authors.R:16:3',
112s 'test-build-home-authors.R:29:3', 'test-build-home-authors.R:90:3',
112s 'test-build-home-authors.R:96:3', 'test-build-home-authors.R:198:3',
112s 'test-build-home-community.R:11:3', 'test-build-home-index.R:4:3',
112s 'test-build-home-index.R:39:3', 'test-build-home-index.R:58:3',
112s 'test-build-home-index.R:86:3', 'test-build-home-index.R:107:3',
112s 'test-build-home-index.R:116:3', 'test-build-home-index.R:125:3',
112s 'test-build-home-index.R:136:3', 'test-build-home-index.R:161:3',
112s 'test-build-news.R:16:3', 'test-build-news.R:52:3',
112s 'test-build-news.R:105:3', 'test-build-news.R:110:3',
112s 'test-build-news.R:115:3', 'test-build-news.R:187:3',
112s 'test-build-news.R:206:3', 'test-build-news.R:220:3',
112s 'test-build-news.R:234:3', 'test-build-news.R:246:3',
112s 'test-build-redirects.R:10:3', 'test-build-redirects.R:27:3',
112s 'test-build-article.R:47:3', 'test-build-article.R:118:3',
112s 'test-build-article.R:175:3', 'test-build-article.R:204:3',
112s 'test-build-article.R:229:3', 'test-build-reference-index.R:10:3',
112s 'test-build-reference-index.R:60:3',
'test-build-reference-index.R:74:3',
112s 'test-build-reference-index.R:115:3',
'test-build-reference-index.R:128:3',
112s 'test-build-search-docs.R:39:3', 'test-build-search-docs.R:47:3',
112s 'test-check-built.R:7:3', 'test-config.R:11:3', 'test-config.R:16:3',
112s 'test-config.R:35:3', 'test-check.R:9:3', 'test-check.R:20:3',
112s 'test-check.R:31:3', 'test-check.R:40:3', 'test-check.R:51:3',
112s 'test-check.R:68:3', 'test-external-deps.R:4:3',
'test-development.R:54:3',
112s 'test-highlight.R:14:3', 'test-highlight.R:28:3',
'test-highlight.R:56:3',
112s 'test-markdown.R:24:3', 'test-markdown.R:61:3',
'test-navbar-menu.R:10:3',
112s 'test-navbar-menu.R:20:3', 'test-navbar-menu.R:28:3',
112s 'test-navbar-menu.R:50:3', 'test-navbar-menu.R:80:3',
112s 'test-navbar-menu.R:84:3', 'test-navbar.R:3:3', 'test-navbar.R:15:3',
112s 'test-navbar.R:25:3', 'test-navbar.R:88:3', 'test-navbar.R:103:3',
112s 'test-navbar.R:124:4', 'test-navbar.R:133:3', 'test-navbar.R:172:3',
112s 'test-init.R:3:3', 'test-init.R:57:3', 'test-preview.R:4:3',
112s 'test-package.R:2:3', 'test-package.R:21:3', 'test-package.R:27:3',
112s 'test-package.R:92:3', 'test-rd-example.R:112:3',
'test-rd-html.R:7:3',
112s 'test-rd-html.R:32:3', 'test-rd-html.R:36:3', 'test-rd-html.R:53:3',
112s 'test-rd-html.R:293:3', 'test-rd-html.R:365:3',
'test-rd-html.R:373:3',
112s 'test-rd-html.R:384:3', 'test-rd-html.R:394:3', 'test-render.R:6:3',
112s 'test-render.R:48:3', 'test-repo.R:53:3', 'test-theme.R:5:3',
112s 'test-theme.R:36:3', 'test-topics-external.R:2:3',
112s 'test-topics-external.R:10:3', 'test-templates.R:121:3',
112s 'test-templates.R:128:3', 'test-templates.R:175:4',
112s 'test-tweak-homepage.R:38:3', 'test-tweak-homepage.R:59:3',
112s 'test-tweak-homepage.R:71:3', 'test-tweak-tabset.R:22:3',
112s 'test-tweak-tags.R:61:3', 'test-tweak-tags.R:177:3',
112s 'test-tweak-tags.R:268:3', 'test-topics.R:18:3',
'test-topics.R:35:3',
112s 'test-topics.R:70:3', 'test-topics.R:157:3', 'test-topics.R:169:3',
112s 'test-utils-fs.R:2:3', 'test-utils-fs.R:9:3', 'test-usage.R:24:3'
112s • quarto package is not installed (8):
'test-build-quarto-articles.R:2:3',
112s 'test-build-quarto-articles.R:15:3',
'test-build-quarto-articles.R:33:3',
112s 'test-build-quarto-articles.R:48:3',
'test-build-quarto-articles.R:64:3',
112s 'test-build-quarto-articles.R:76:3',
'test-build-quarto-articles.R:93:3',
112s 'test-figure.R:3:3'
112s 112s ══ Failed tests
════════════════════════════════════════════════════════════════
113s ── Error ('test-build-article.R:20:3'): can override
html_document() options ───
113s Error in `build_article("test", pkg)`: ! Failed to render
'vignettes/test.Rmd'.
113s Caused by error:
113s ! path for html_dependency not found:
/usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─base::suppressMessages(path <- build_article("test", pkg))
at test-build-article.R:20:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("test", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)
113s 8. │ └─throw(callr_remote_error(remerr, output), parent =
fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond)
113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`)
113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call)
113s 12. └─cli::cli_abort(...)
113s 13. └─rlang::abort(...)
113s ── Error ('test-build-article.R:40:3'): can set width
──────────────────────────
113s Error in `build_article("test", pkg)`: ! Failed to render
'vignettes/test.Rmd'.
113s Caused by error:
113s ! path for html_dependency not found:
/usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─base::suppressMessages(path <- build_article("test", pkg))
at test-build-article.R:40:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("test", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)
113s 8. │ └─throw(callr_remote_error(remerr, output), parent =
fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond)
113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`)
113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call)
113s 12. └─cli::cli_abort(...)
113s 13. └─rlang::abort(...)
113s ── Error ('test-build-article.R:62:3'): BS5 article laid out
correctly with and without TOC ──
113s Error in `build_article("toc-true", pkg)`: ! Failed to render
'vignettes/toc-true.Rmd'.
113s Caused by error:
113s ! path for html_dependency not found:
/usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─base::suppressMessages(...) at test-build-article.R:62:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("toc-true", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)
113s 8. │ └─throw(callr_remote_error(remerr, output), parent =
fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond)
113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`)
113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call)
113s 12. └─cli::cli_abort(...)
113s 13. └─rlang::abort(...)
113s ── Error ('test-build-article.R:80:3'): BS5 article gets correctly
activated navbar ──
113s Error in `build_article("article", pkg)`: ! Failed to render
'vignettes/article.Rmd'.
113s Caused by error:
113s ! path for html_dependency not found:
/usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─base::suppressMessages(...) at test-build-article.R:80:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("article", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)
113s 8. │ └─throw(callr_remote_error(remerr, output), parent =
fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond)
113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`)
113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call)
113s 12. └─cli::cli_abort(...)
113s 13. └─rlang::abort(...)
113s ── Error ('test-build-article.R:94:3'): titles are escaped when
needed ─────────
113s Error in `build_article("test", pkg)`: ! Failed to render
'vignettes/test.Rmd'.
113s Caused by error:
113s ! path for html_dependency not found:
/usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─base::suppressMessages(path <- build_article("test", pkg))
at test-build-article.R:94:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("test", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)
113s 8. │ └─throw(callr_remote_error(remerr, output), parent =
fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond)
113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`)
113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call)
113s 12. └─cli::cli_abort(...)
113s 13. └─rlang::abort(...)
113s ── Error ('test-build-article.R:106:3'): output is reproducible by
default, i.e. 'seed' is respected ──
113s Error in `build_article("test", pkg)`: ! Failed to render
'vignettes/test.Rmd'.
113s Caused by error:
113s ! path for html_dependency not found:
/usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─base::suppressMessages(path <- build_article("test", pkg))
at test-build-article.R:106:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("test", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)
113s 8. │ └─throw(callr_remote_error(remerr, output), parent =
fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond)
113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`)
113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call)
113s 12. └─cli::cli_abort(...)
113s 13. └─rlang::abort(...)
113s ── Error ('test-build-article.R:127:3'): can control math mode
─────────────────
113s Error in `build_article("math", pkg)`: ! Failed to render
'vignettes/math.Rmd'.
113s Caused by error:
113s ! path for html_dependency not found:
/usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─base::suppressMessages(path <- build_article("math", pkg))
at test-build-article.R:127:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("math", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)
113s 8. │ └─throw(callr_remote_error(remerr, output), parent =
fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond)
113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`)
113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call)
113s 12. └─cli::cli_abort(...)
113s 13. └─rlang::abort(...)
113s ── Error ('test-build-article.R:167:3'): build_article styles ANSI
escapes ─────
113s Error in `build_article("test", pkg)`: ! Failed to render
'vignettes/test.Rmd'.
113s Caused by error:
113s ! path for html_dependency not found:
/usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─base::suppressMessages(path <- build_article("test", pkg))
at test-build-article.R:167:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("test", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)
113s 8. │ └─throw(callr_remote_error(remerr, output), parent =
fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond)
113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`)
113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call)
113s 12. └─cli::cli_abort(...)
113s 13. └─rlang::abort(...)
113s ── Error ('test-build-article.R:223:3'): build_article copies image
files in subdirectories ──
113s Error in `build_article("test", pkg)`: ! Failed to render
'vignettes/test.Rmd'.
113s Caused by error:
113s ! path for html_dependency not found:
/usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─pkgdown::build_article("test", pkg)
113s 2. │ └─pkgdown:::build_rmarkdown_article(...)
113s 3. │ ├─base::withCallingHandlers(...)
113s 4. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 5. │ └─callr:::get_result(output = out, options)
113s 6. │ └─throw(callr_remote_error(remerr, output), parent =
fix_msg(remerr[[3]]))
113s 7. │ └─base::signalCondition(cond)
113s 8. └─pkgdown (local) `<fn>`(`<cllr_st_>`)
113s 9. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call)
113s 10. └─cli::cli_abort(...)
113s 11. └─rlang::abort(...)
113s ── Error ('test-build-article.R:276:3'): warns about missing images
────────────
113s Error in `build_article("kitten", pkg)`: ! Failed to render
'vignettes/kitten.Rmd'.
113s Caused by error:
113s ! path for html_dependency not found:
/usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─pkgdown::build_article("kitten", pkg)
113s 2. │ └─pkgdown:::build_rmarkdown_article(...)
113s 3. │ ├─base::withCallingHandlers(...)
113s 4. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 5. │ └─callr:::get_result(output = out, options)
113s 6. │ └─throw(callr_remote_error(remerr, output), parent =
fix_msg(remerr[[3]]))
113s 7. │ └─base::signalCondition(cond)
113s 8. └─pkgdown (local) `<fn>`(`<cllr_st_>`)
113s 9. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call)
113s 10. └─cli::cli_abort(...)
113s 11. └─rlang::abort(...)
113s ── Failure ('test-build-article.R:289:3'): spaces in sorce paths do
work ───────
113s Expected `suppressMessages(build_article("kitten",
as_pkgdown(pkg1)))` to run without any errors.
113s i Actually got a <rlang_error> with text:
113s ! Failed to render 'vignettes/kitten.Rmd'.
113s Caused by error:
113s ! path for html_dependency not found:
/usr/lib/R/site-library/jquerylib/lib/3.7.1
113s ── Error ('test-build-article.R:298:3'): warns about missing
alt-text ──────────
113s Error in `build_article("kitten", pkg)`: ! Failed to render
'vignettes/kitten.Rmd'.
113s Caused by error:
113s ! path for html_dependency not found:
/usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─pkgdown::build_article("kitten", pkg)
113s 2. │ └─pkgdown:::build_rmarkdown_article(...)
113s 3. │ ├─base::withCallingHandlers(...)
113s 4. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 5. │ └─callr:::get_result(output = out, options)
113s 6. │ └─throw(callr_remote_error(remerr, output), parent =
fix_msg(remerr[[3]]))
113s 7. │ └─base::signalCondition(cond)
113s 8. └─pkgdown (local) `<fn>`(`<cllr_st_>`)
113s 9. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call)
113s 10. └─cli::cli_abort(...)
113s 11. └─rlang::abort(...)
113s ── Error ('test-build-article.R:318:3'): pkgdown deps are included
only once in articles ──
113s Error in `build_article("test", pkg)`: ! Failed to render
'vignettes/test.Rmd'.
113s Caused by error:
113s ! path for html_dependency not found:
/usr/lib/R/site-library/jquerylib/lib/3.7.1
113s Backtrace:
113s ▆
113s 1. ├─base::suppressMessages(path <- build_article("test", pkg))
at test-build-article.R:318:3
113s 2. │ └─base::withCallingHandlers(...)
113s 3. ├─pkgdown::build_article("test", pkg)
113s 4. │ └─pkgdown:::build_rmarkdown_article(...)
113s 5. │ ├─base::withCallingHandlers(...)
113s 6. │ └─callr::r_safe(rmarkdown_render_with_seed, args = args,
show = !quiet)
113s 7. │ └─callr:::get_result(output = out, options)
113s 8. │ └─throw(callr_remote_error(remerr, output), parent =
fix_msg(remerr[[3]]))
113s 9. │ └─base::signalCondition(cond)
113s 10. └─pkgdown (local) `<fn>`(`<cllr_st_>`)
113s 11. └─pkgdown:::wrap_rmarkdown_error(cnd, input_file, call)
113s 12. └─cli::cli_abort(...)
113s 13. └─rlang::abort(...)
113s 113s [ FAIL 13 | WARN 3 | SKIP 132 | PASS 661 ]
113s Error: Test failures
114s Execution halted
114s autopkgtest [23:08:31]: test run-unit-test
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