[R-pkg-team] Bug#1139526: r-cran-partitions: FTBFS: LaTeX error
Santiago Vila
sanvila at debian.org
Tue Jun 9 11:30:13 BST 2026
Package: src:r-cran-partitions
Version: 1.10-9+ds-3
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202606/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:r-cran-partitions, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary
dh binary --buildsystem R
dh_update_autotools_config -O--buildsystem=R
dh_autoreconf -O--buildsystem=R
dh_auto_configure -O--buildsystem=R
dh_auto_build -O--buildsystem=R
dh_auto_test -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=R
dh_prep -O--buildsystem=R
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p inst/doc
rsvg-convert vignettes/algorithm.svg -o vignettes/algorithm.png
rsvg-convert vignettes/blocks.svg -o vignettes/blocks.png
rsvg-convert vignettes/strand.svg -o vignettes/strand.png
dh_auto_install
I: R packages needed for DEP8: testthat, covr
I: R Package: partitions Version: 1.10-9
I: Building using R version 4.6.0-5
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Wed, 11 Mar 2026 09:15:35 +0900
mkdir -p /<<BUILDDIR>>/r-cran-partitions-1.10-9\+ds/debian/r-cran-partitions/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-cran-partitions-1.10-9\+ds/debian/r-cran-partitions/usr/lib/R/site-library --clean . --built-timestamp="'Wed, 11 Mar 2026 09:15:35 +0900'"
* installing *source* package ‘partitions’ ...
** this is package ‘partitions’ version ‘1.10-9’
files ‘build/partial.rdb’, ‘build/vignette.rds’, ‘inst/doc/partitions.R’, ‘inst/doc/partitions.Rnw’, ‘inst/doc/partitions.pdf’, ‘inst/doc/scrabble.R’, ‘inst/doc/scrabble.Rnw’, ‘inst/doc/scrabble.pdf’, ‘inst/doc/setpartitions.R’, ‘inst/doc/setpartitions.Rnw’, ‘inst/doc/setpartitions.pdf’, ‘vignettes/algorithm.pdf’, ‘vignettes/answers.Rdata’, ‘vignettes/blocks.pdf’, ‘vignettes/strand.pdf’ are missing
files ‘vignettes/scrabble.Rnw’, ‘vignettes/setpartitions.Rnw’ have the wrong MD5 checksums
** using staged installation
** libs
using C compiler: ‘x86_64-linux-gnu-gcc (Debian 15.2.0-17) 15.2.0’
using C++ compiler: ‘x86_64-linux-gnu-g++ (Debian 15.2.0-17) 15.2.0’
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
x86_64-linux-gnu-g++ -std=gnu++20 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c app.cpp -o app.o
x86_64-linux-gnu-gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c partitions.c -o partitions.o
x86_64-linux-gnu-gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c partitions_init.c -o partitions_init.o
x86_64-linux-gnu-gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c permutations.c -o permutations.o
x86_64-linux-gnu-g++ -std=gnu++20 -shared -L/usr/lib/R/lib -Wl,-z,relro -o partitions.so app.o partitions.o partitions_init.o permutations.o -L/usr/lib/R/lib -lR
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-partitions/usr/lib/R/site-library/00LOCK-r-cran-partitions-1.10-9+ds/00new/partitions/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (partitions)
W: Ignoring specified R dependency: R (>= 3.6.0)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-covr for Recommends:covr
I: Using r-cran-gmp for Imports:gmp
I: Using r-cran-polynom for Imports:polynom
I: Using r-cran-sets for Imports:sets
I: Using r-cran-rdpack for Imports:Rdpack
I: Use r-cran-partitions as Debian binary package for variables substitution
R_LIBS=debian/r-cran-partitions/usr/lib/R/site-library dh_vignette
R version 4.6.0 (2026-04-24) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> tools::buildVignettes(dir=".", tangle=TRUE, quiet=TRUE)
--- re-building ‘partitions.Rnw’ using Sweave
Loading required package: partitions
Error: processing vignette 'partitions.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'partitions.tex' failed.
LaTeX errors:
! Undefined control sequence.
<argument> cite.\@citeb
\@extra at b@citeb
l.71 \begin{document}
! Emergency stop.
<argument> cite.\@citeb
\@extra at b@citeb
l.71 \begin{document}
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘partitions.Rnw’
--- re-building ‘scrabble.Rnw’ using Sweave
Error: processing vignette 'scrabble.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'scrabble.tex' failed.
LaTeX errors:
! Undefined control sequence.
<argument> cite.\@citeb
\@extra at b@citeb
l.76 \begin{document}
! Emergency stop.
<argument> cite.\@citeb
\@extra at b@citeb
l.76 \begin{document}
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘scrabble.Rnw’
--- re-building ‘setpartitions.Rnw’ using Sweave
Error: processing vignette 'setpartitions.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'setpartitions.tex' failed.
LaTeX errors:
! Undefined control sequence.
<argument> cite.\@citeb
\@extra at b@citeb
l.82 \begin{document}
! Emergency stop.
<argument> cite.\@citeb
\@extra at b@citeb
l.82 \begin{document}
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘setpartitions.Rnw’
SUMMARY: processing the following files failed:
‘partitions.Rnw’ ‘scrabble.Rnw’ ‘setpartitions.Rnw’
Error: Vignette re-building failed.
Execution halted
make[1]: *** [debian/rules:21: override_dh_auto_install] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:4: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2
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