[R-pkg-team] Bug#914731: r-bioc-biocparallel: autopkgtest regression

Graham Inggs ginggs at debian.org
Mon Nov 26 19:13:01 GMT 2018


Source: r-bioc-biocparallel
Version: 1.14.0-1
X-Debbugs-CC: debian-ci at lists.debian.org
User: debian-ci at lists.debian.org
Usertags: regression

Hi Maintainer

Since the upload of 1.14.0-1, r-bioc-biocparallel has been failing its
own autopkgtests with the following error:

RUNIT TEST PROTOCOL -- Mon Nov 26 17:50:31 2018
***********************************************
Number of test functions: 63
Number of deactivated test functions: 1
Number of errors: 1
Number of failures: 1


1 Test Suite :
BiocParallel RUnit Tests - 63 test functions, 1 error, 1 failure
DEACTIVATED test_SnowParam_workers: 'snow' and/or 'Rmpi' package did not load
ERROR in test_bpaggregate: Error in (function (classes, fdef, mtable)  :
  unable to find an inherited method for function 'bpworkers<-' for
signature '"SerialParam", "numeric"'
FAILURE in test_stop.on.error: Error in
checkIdentical(c("bplist_error", "bperror", "error", "condition"),  :
  FALSE

Error in BiocGenerics:::testPackage("BiocParallel") :
  unit tests failed for package BiocParallel

Test files with failing tests

   test_SnowParam.R
     test_SnowParam_workers

   test_bpaggregate.R
     test_bpaggregate

   test_errorhandling.R
     test_stop.on.error


Execution halted
autopkgtest [17:50:31]: test run-unit-test: -----------------------]
autopkgtest [17:50:31]: test run-unit-test:  - - - - - - - - - -
results - - - - - - - - - -
run-unit-test        FAIL non-zero exit status 1

Regards
Graham

[1] https://ci.debian.net/packages/r/r-bioc-biocparallel/unstable/amd64/



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