[R-pkg-team] Bug#934281: r-bioc-metagenomeseq: Should not migrate to testing

Andreas Tille tille at debian.org
Fri Aug 9 06:15:47 BST 2019

Package: r-bioc-metagenomeseq
Severity: grave
Tags: upstream
Justification: renders package unusable


we can not upgrade r-bioc-metagenomeseq to the new upstream version
since it got a new dependency from a non-free package.  We are sorting
this out with upstream but this might take time.  All other r-bioc
packages are depending from the virtual package r-api-bioc-3.9 while
r-bioc-metagenomeseq 1.24.1-1 depends r-api-bioc-3.8.  So there is a
conflicting dependency.

Kind regards


-- System Information:
Debian Release: 10.0
  APT prefers testing
  APT policy: (501, 'testing'), (500, 'buildd-unstable'), (50, 'unstable'), (5, 'experimental'), (1, 'buildd-experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 4.19.0-5-amd64 (SMP w/4 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8), LANGUAGE=de_DE:de (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages r-bioc-metagenomeseq depends on:
pn  r-api-bioc-3.8           <none>
ii  r-base-core [r-api-3.5]  3.5.2-1
pn  r-bioc-biobase           <none>
pn  r-bioc-limma             <none>
pn  r-cran-foreach           <none>
pn  r-cran-glmnet            <none>
pn  r-cran-gplots            <none>
ii  r-cran-matrix            1.2-15-1
ii  r-cran-matrixstats       0.54.0-1
ii  r-cran-rcolorbrewer      1.1-2-2

Versions of packages r-bioc-metagenomeseq recommends:
ii  r-cran-testthat  2.0.1-1

Versions of packages r-bioc-metagenomeseq suggests:
pn  r-bioc-annotate      <none>
pn  r-bioc-biocgenerics  <none>
pn  r-bioc-biomformat    <none>
pn  r-cran-gss           <none>
ii  r-cran-knitr         1.21+dfsg-2
pn  r-cran-vegan         <none>

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