[R-pkg-team] Bug#940061: ITP: r-bioc-dada2 -- sample inference from amplicon sequencing data

[Steffen Moeller]

Package: wnpp
Severity: wishlist

Subject: ITP: r-bioc-dada2 -- sample inference from amplicon sequencing data
Package: wnpp
Owner: Steffen Moeller <moeller at debian.org>
Severity: wishlist

* Package name    : r-bioc-dada2
  Version         : 1.12.1
  Upstream Author : Benjamin Callahan <benjamin.j.callahan at gmail.com>
* URL             : https://bioconductor.org/packages/dada2/
* License         : LGPL-3
  Programming Lang: GNU R
  Description     : sample inference from amplicon sequencing data
 The dada2 package contributes to software workflows to interpret
 sequencing data from microbiota - the relative abundance of
 bacterial and/or yeast, typically measured in the gut.
 It infers exact amplicon sequence
 variants (ASVs) from high-throughput amplicon sequencing data,
 replacing the coarser and less accurate OTU clustering approach.
 The dada2 pipeline takes as input demultiplexed fastq files, and
 outputs the sequence variants and their sample-wise abundances
 after removing substitution and chimera errors. Taxonomic
 classification is available via a native implementation of the RDP
 naive Bayesian classifier, and species-level assignment to 16S
 rRNA gene fragments by exact matching.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-bioc-dada2