[Reproducible-builds] Bug#798932: bppphyview: FTBFS: TreeCommands.h:225: undefined reference to `bpp::TextTools::toString[abi:cxx11](int)'
Chris Lamb
lamby at debian.org
Mon Sep 14 08:55:13 UTC 2015
Source: bppphyview
Version: 0.3.0-1
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org
Dear Maintainer,
bppphyview fails to build from source in unstable/amd64, probably GCC-5
related:
[..]
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`InsertSubtreeOnBranchCommand::InsertSubtreeOnBranchCommand(TreeDocument*,
int, bpp::Node*)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:225: undefined
reference to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `main':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/PhyView.cpp:1150: undefined
reference to `bpp::IOTreeFactory::NEWICK_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function `void
std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >::_M_construct_aux<char*>(char*, char*,
std::__false_type)':
/usr/include/c++/5/bits/basic_string.h:195: undefined reference to
`bpp::IOTreeFactory::NEWICK_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/PhyView.cpp.o: In function
`std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >::assign(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&)':
/usr/include/c++/5/bits/basic_string.h:1094: undefined reference to
`bpp::IOTreeFactory::NHX_FORMAT[abi:cxx11]'
/usr/include/c++/5/bits/basic_string.h:1094: undefined reference to
`bpp::IOTreeFactory::NEWICK_FORMAT[abi:cxx11]'
CMakeFiles/phyview.dir/TreeSubWindow.cpp.o: In function `QString
bpp::QtTools::toQt<double>(bpp::Number<double> const&)':
/usr/include/Bpp/Qt/QtTools.h:83: undefined reference to
`bpp::TextTools::toString[abi:cxx11](double, int)'
CMakeFiles/phyview.dir/TreeSubWindow.cpp.o: In function
`TreeSubWindow::updateTable()':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeSubWindow.cpp:107:
undefined reference to
`bpp::TreeTemplateTools::getNodePropertyNames(bpp::Node const&,
std::vector<std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >,
std::allocator<std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >&)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeSubWindow.cpp:109:
undefined reference to
`bpp::TreeTemplateTools::getBranchPropertyNames(bpp::Node const&,
std::vector<std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> >,
std::allocator<std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > > >&)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeSubWindow.cpp:122:
undefined reference to `bpp::TextTools::toString[abi:cxx11](int)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeSubWindow.cpp:133:
undefined reference to `bpp::TextTools::toString[abi:cxx11](double,
int)'
CMakeFiles/phyview.dir/TreeSubWindow.cpp.o: In function
`ChangeNodeNameCommand::ChangeNodeNameCommand(TreeDocument*, int,
std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:266: undefined
reference to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/TreeSubWindow.cpp.o: In function
`ChangeBranchLengthCommand::ChangeBranchLengthCommand(TreeDocument*,
int, double)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:254: undefined
reference to `bpp::TextTools::toString[abi:cxx11](double, int)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.h:254: undefined
reference to `bpp::TextTools::toString[abi:cxx11](int)'
CMakeFiles/phyview.dir/TreeCommands.cpp.o: In function
`AttachDataCommand::addProperties_(bpp::Node*, bpp::DataTable const&,
unsigned int, bool)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:75: undefined
reference to `bpp::TextTools::toString[abi:cxx11](int)'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:77: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long,
unsigned long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:80: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long,
unsigned long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:80: undefined
reference to `bpp::DataTable::getColumnName[abi:cxx11](unsigned long)
const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:90: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long,
unsigned long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:93: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long,
unsigned long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:93: undefined
reference to `bpp::DataTable::getColumnName[abi:cxx11](unsigned long)
const'
CMakeFiles/phyview.dir/TreeCommands.cpp.o: In function
`TranslateNodeNamesCommand::TranslateNodeNamesCommand(TreeDocument*,
bpp::DataTable const&, unsigned int, unsigned int)':
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:45: undefined
reference to `bpp::DataTable::getColumnName[abi:cxx11](unsigned long)
const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:45: undefined
reference to `bpp::DataTable::getColumnName[abi:cxx11](unsigned long)
const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:51: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long,
unsigned long) const'
/tmp/buildd/bppphyview-0.3.0/bppPhyView/TreeCommands.cpp:51: undefined
reference to `bpp::DataTable::operator()[abi:cxx11](unsigned long,
unsigned long) const'
collect2: error: ld returned 1 exit status
bppPhyView/CMakeFiles/phyview.dir/build.make:203: recipe for target
'bppPhyView/phyview' failed
make[3]: *** [bppPhyView/phyview] Error 1
make[3]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
CMakeFiles/Makefile2:299: recipe for target
'bppPhyView/CMakeFiles/phyview.dir/all' failed
make[2]: *** [bppPhyView/CMakeFiles/phyview.dir/all] Error 2
make[2]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
Makefile:136: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory '/tmp/buildd/bppphyview-0.3.0'
debian/rules:103: recipe for target 'install-arch' failed
make: *** [install-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit
status 2
[..]
The full build log is attached or can be viewed here:
https://reproducible.debian.net/logs/unstable/amd64/bppphyview_0.3.0-1.build1.log.gz
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` lamby at debian.org / chris-lamb.co.uk
`-
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