[Reproducible-builds] Bug#804223: r-bioc-variantannotation: FTBFS: Error : objects 'FilterRules', 'seqsplit', 'FilterMatrix', 'subsetByFilter' are not exported by 'namespace:IRanges'

[Chris Lamb]

Source: r-bioc-variantannotation
Version: 1.14.13-1
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org

Dear Maintainer,

r-bioc-variantannotation fails to build from source in unstable/amd64:

  [..]

  ** R
  ** inst
  ** preparing package for lazy loading
  Warning: replacing previous import by 'IRanges::FilterRules' when
  loading 'VariantAnnotation'
  Warning: replacing previous import by 'IRanges::FilterMatrix' when
  loading 'VariantAnnotation'
  Error : objects 'FilterRules', 'seqsplit', 'FilterMatrix',
  'subsetByFilter' are not exported by 'namespace:IRanges'
  ERROR: lazy loading failed for package 'VariantAnnotation'
  * removing
  '/build/r-bioc-variantannotation-1.14.13/debian/r-bioc-variantannotation/usr/lib/R/site-library/VariantAnnotation'
  /usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch'
  failed
  make: *** [R_any_arch] Error 1
  dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit
  status 2

  [..]

The full build log is attached or can be viewed here:

    https://reproducible.debian.net/logs/unstable/amd64/r-bioc-variantannotation_1.14.13-1.build1.log.gz


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby at debian.org / chris-lamb.co.uk
       `-
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