[Reproducible-builds] Bug#808593: htsjdk: FTBFS: [testng] FAILED: testHTTPNotExist

Chris Lamb lamby at debian.org
Mon Dec 21 10:59:11 UTC 2015 

Source: htsjdk
Version: 1.138+dfsg.1-4
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org

Dear Maintainer,

htsjdk fails to build from source in unstable/amd64:

  [..]

     [testng] PASSED: testReadAndSkipWithMultipleBlocks([null of CHAR, null of CHAR, null of FLOAT])
     [testng] PASSED: testReadAndSkipWithMultipleBlocks([null of CHAR, null of CHAR, null of CHAR])
     [testng] FAILED: testHTTPNotExist
     [testng] java.lang.AssertionError: expected [false] but found [true]
     [testng] 	at org.testng.Assert.fail(Assert.java:94)
     [testng] 	at org.testng.Assert.failNotEquals(Assert.java:496)
     [testng] 	at org.testng.Assert.assertEquals(Assert.java:125)
     [testng] 	at org.testng.Assert.assertEquals(Assert.java:288)
     [testng] 	at org.testng.Assert.assertEquals(Assert.java:298)
     [testng] 	at htsjdk.tribble.util.ParsingUtilsTest.tstExists(ParsingUtilsTest.java:142)
     [testng] 	at htsjdk.tribble.util.ParsingUtilsTest.testHTTPNotExist(ParsingUtilsTest.java:137)
     [testng] 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
     [testng] 	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
     [testng] 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
     [testng] 	at java.lang.reflect.Method.invoke(Method.java:606)
     [testng] 	at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85)
     [testng] 	at org.testng.internal.Invoker.invokeMethod(Invoker.java:639)
     [testng] 	at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:821)
     [testng] 	at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1131)
     [testng] 	at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124)
     [testng] 	at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108)
     [testng] 	at org.testng.TestRunner.privateRun(TestRunner.java:773)
     [testng] 	at org.testng.TestRunner.run(TestRunner.java:623)
     [testng] 	at org.testng.SuiteRunner.runTest(SuiteRunner.java:357)
     [testng] 	at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352)
     [testng] 	at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310)
     [testng] 	at org.testng.SuiteRunner.run(SuiteRunner.java:259)
     [testng] 	at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
     [testng] 	at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86)
     [testng] 	at org.testng.TestNG.runSuitesSequentially(TestNG.java:1185)
     [testng] 	at org.testng.TestNG.runSuitesLocally(TestNG.java:1110)
     [testng] 	at org.testng.TestNG.run(TestNG.java:1018)
     [testng] 	at org.testng.TestNG.privateMain(TestNG.java:1325)
     [testng] 	at org.testng.TestNG.main(TestNG.java:1294)
     [testng] 
     [testng] SKIPPED: basic
     [testng] org.testng.TestNGException: 
     [testng] Method public void htsjdk.samtools.util.IupacTest.basic(java.lang.String) throws java.lang.Exception requires a @DataProvider named : basicDataProvider
     [testng] 	at org.testng.internal.Parameters.findDataProvider(Parameters.java:262)
     [testng] 	at org.testng.internal.Parameters.handleParameters(Parameters.java:418)
     [testng] 	at org.testng.internal.Invoker.handleParameters(Invoker.java:1276)
     [testng] 	at org.testng.internal.Invoker.createParameters(Invoker.java:992)
     [testng] 	at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1082)
     [testng] 	at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124)
     [testng] 	at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108)
     [testng] 	at org.testng.TestRunner.privateRun(TestRunner.java:773)
     [testng] 	at org.testng.TestRunner.run(TestRunner.java:623)
     [testng] 	at org.testng.SuiteRunner.runTest(SuiteRunner.java:357)
     [testng] 	at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352)
     [testng] 	at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310)
     [testng] 	at org.testng.SuiteRunner.run(SuiteRunner.java:259)
     [testng] 	at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)
     [testng] 	at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86)
     [testng] 	at org.testng.TestNG.runSuitesSequentially(TestNG.java:1185)
     [testng] 	at org.testng.TestNG.runSuitesLocally(TestNG.java:1110)
     [testng] 	at org.testng.TestNG.run(TestNG.java:1018)
     [testng] 	at org.testng.TestNG.privateMain(TestNG.java:1325)
     [testng] 	at org.testng.TestNG.main(TestNG.java:1294)
     [testng] 
     [testng] 
     [testng] ===============================================
     [testng]     Ant test
     [testng]     Tests run: 22291, Failures: 1, Skips: 1
     [testng] ===============================================
     [testng] 
     [testng] 
     [testng] ===============================================
     [testng] htsjdk-tests
     [testng] Total tests run: 22291, Failures: 1, Skips: 1
     [testng] ===============================================
     [testng] 
     [testng] [TestNG] Time taken by org.testng.reporters.JUnitReportReporter at 701b9555: 373 ms
     [testng] [TestNG] Time taken by org.testng.reporters.SuiteHTMLReporter at 361b90be: 1395 ms
     [testng] [TestNG] Time taken by org.testng.reporters.jq.Main at 38d591cc: 2560 ms
     [testng] [TestNG] Time taken by org.testng.reporters.XMLReporter at 26538d04: 944 ms
     [testng] [TestNG] Time taken by [FailedReporter passed=0 failed=0 skipped=0]: 18 ms
     [testng] [TestNG] Time taken by org.testng.reporters.EmailableReporter2 at 1b66a538: 266 ms
     [testng] The tests failed.
  [junitreport] the file /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/testng-failed.xml is not a valid testsuite XML document
  [junitreport] the file /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/testng-results.xml is not a valid testsuite XML document
  [junitreport] Processing /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/TESTS-TestSuites.xml to /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/junit-noframes.html
  [junitreport] Loading stylesheet /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/etc/test/junit-noframes.xsl
  [junitreport] Transform time: 243ms
       [copy] Copying 1 file to /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test
  
  BUILD FAILED
  /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/build.xml:151: There were failed unit tests
  
  Total time: 6 minutes 39 seconds
  dh_auto_build: ant -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 -Ddebug=true test returned exit code 1
  debian/rules:24: recipe for target 'override_dh_auto_test' failed
  make[1]: *** [override_dh_auto_test] Error 2
  make[1]: Leaving directory '/home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1'
  debian/rules:10: recipe for target 'build' failed
  make: *** [build] Error 2

  [..]

The full build log is attached.


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby at debian.org / chris-lamb.co.uk
       `-
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