[Reproducible-builds] Bug#813261: jhdf: FTBFS: checking dependencies for HDF5 library... configure: error: HDF5 library needs SZIP, SZIP not defined.
Chris Lamb
lamby at debian.org
Sat Jan 30 22:50:46 UTC 2016
Source: jhdf
Version: 2.9-3
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org
Dear Maintainer,
jhdf fails to build from source in unstable/amd64:
[..]
dpkg-buildpackage -rfakeroot -D -us -uc -b
dpkg-buildpackage: source package jhdf
dpkg-buildpackage: source version 2.9-3
dpkg-buildpackage: source distribution unstable
dpkg-buildpackage: source changed by Gilles Filippini <pini at debian.org>
dpkg-source --before-build jhdf-2.9
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
debian/rules:8: warning: overriding recipe for target 'debian/stamp-autotools-files'
/usr/share/cdbs/1/class/autotools-files.mk:62: warning: ignoring old recipe for target 'debian/stamp-autotools-files'
test -x debian/rules
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . -k distclean
make[1]: Entering directory '/home/lamby/temp/cdt.20160130232955.jgWdBUQJlG/jhdf-2.9'
make[1]: *** No rule to make target 'distclean'.
make[1]: Leaving directory '/home/lamby/temp/cdt.20160130232955.jgWdBUQJlG/jhdf-2.9'
/usr/share/cdbs/1/class/makefile.mk:55: recipe for target 'makefile-clean' failed
make: [makefile-clean] Error 2 (ignored)
rm -f debian/stamp-autotools
rmdir --ignore-fail-on-non-empty .
rmdir: failed to remove '.': Invalid argument
/usr/share/cdbs/1/class/autotools.mk:52: recipe for target 'makefile-clean' failed
make: [makefile-clean] Error 1 (ignored)
for i in ./config/config.guess ./config/config.sub ; do \
if test -e $i.cdbs-orig ; then \
mv $i.cdbs-orig $i ; \
fi ; \
done
dh_clean
dh_clean: Pretending DH_COMPAT was set to 5
dh_clean: - this is a temporary measure to avoid FTBFS in packages
dh_clean: relying on cdbs to set debian/compat to 5 during the build
dh_clean: No compatibility level specified in debian/compat
dh_clean: This package will soon FTBFS; time to fix it!
rm -f debian/stamp-autotools-files
debian/rules build
debian/rules:8: warning: overriding recipe for target 'debian/stamp-autotools-files'
/usr/share/cdbs/1/class/autotools-files.mk:62: warning: ignoring old recipe for target 'debian/stamp-autotools-files'
test -x debian/rules
mkdir -p "."
echo 5 >debian/compat
if test -e /usr/share/misc/config.guess ; then \
for i in ./config/config.guess ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.guess $i ; \
fi ; \
done ; \
fi
if test -e /usr/share/misc/config.sub ; then \
for i in ./config/config.sub ; do \
if ! test -e $i.cdbs-orig ; then \
mv $i $i.cdbs-orig ; \
cp --remove-destination /usr/share/misc/config.sub $i ; \
fi ; \
done ; \
fi
autoreconf -i
aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
touch debian/stamp-autotools-files
chmod a+x /home/lamby/temp/cdt.20160130232955.jgWdBUQJlG/jhdf-2.9/./configure
mkdir -p .
cd . && CFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wall" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro" /home/lamby/temp/cdt.20160130232955.jgWdBUQJlG/jhdf-2.9/./configure --build=x86_64-linux-gnu --prefix=/home/lamby/temp/cdt.20160130232955.jgWdBUQJlG/jhdf-2.9/debian/tmp/ --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/jhdf" --srcdir=. --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules --with-jdk=/usr/lib/jvm/default-java/include/,/usr/lib/jvm/default-java/lib/ --with-classpath=/usr/lib/jvm/default-java/lib/ --with-javabin=/usr/lib/jvm/default-java/bin/ --with-libz=yes,/usr/lib --with-libjpeg=yes,/usr/lib/ --with-hdf5=/usr/include/hdf5/serial,/usr/lib/x86_64-linux-gnu/hdf5/serial --with-hdf4=/usr/include/hdf/,/usr/lib/ CC=gcc
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking, --disable-silent-rules, --with-classpath
checking if tr works... yes
checking for gawk... no
checking for mawk... mawk
checking if expr works... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether make sets $(MAKE)... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for ceil in -lm... yes
checking for rm... /bin/rm
checking for find... /usr/bin/find
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
FYI the target here is: x86_64-pc-linux-gnu
checking gzip compression... yes
zlib found: -lz
checking jpeg compression... yes
jpeg found: -ljpeg
checking szip compression... no
checking HDF4 library... yes
HDF4 found: -lmfhdf -ldf
checking dependencies for HDF4 library... OK
checking HDF5 library... yes
HDF5 found: -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5
checking dependencies for HDF5 library... configure: error: HDF5 library needs SZIP, SZIP not defined.
/usr/share/cdbs/1/class/autotools.mk:42: recipe for target 'debian/stamp-autotools' failed
make: *** [debian/stamp-autotools] Error 1
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` lamby at debian.org / chris-lamb.co.uk
`-
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