[Reproducible-builds] Bug#813465: bcftools: FTBFS: vcfmerge.c:424:6: error: conflicting types for 'bcf_hdr_merge'

[Chris Lamb]

Source: bcftools
Version: 1.2-2
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org

Dear Maintainer,

bcftools fails to build from source in unstable/amd64:

  [..]

  cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 -DPLUGINPATH=\"/usr/lib/x86_64-linux-gnu/bcftools\" -DUSE_GPL  -I. -I/usr/include vcfsom.c -o vcfsom.o
  vcfmerge.c:424:6: error: conflicting types for 'bcf_hdr_merge'
   void bcf_hdr_merge(bcf_hdr_t *hw, const bcf_hdr_t *hr, const char *clash_prefix, int force_samples)
        ^
  In file included from vcfmerge.c:30:0:
  /usr/include/htslib/vcf.h:407:16: note: previous declaration of 'bcf_hdr_merge' was here
       bcf_hdr_t *bcf_hdr_merge(bcf_hdr_t *dst, const bcf_hdr_t *src);
                  ^
  vcfmerge.c: In function 'bcf_hdr_merge':
  vcfmerge.c:427:5: warning: 'bcf_hdr_combine' is deprecated: Please use bcf_hdr_merge instead [-Wdeprecated-declarations]
       int ret = bcf_hdr_combine(hw, hr);
       ^
  In file included from vcfmerge.c:30:0:
  /usr/include/htslib/vcf.h:391:9: note: declared here
       int bcf_hdr_combine(bcf_hdr_t *dst, const bcf_hdr_t *src) HTS_DEPRECATED("Please use bcf_hdr_merge instead");
           ^
  Makefile:90: recipe for target 'vcfmerge.o' failed
  make[1]: *** [vcfmerge.o] Error 1
  make[1]: *** Waiting for unfinished jobs....
  make[1]: Leaving directory '/home/lamby/temp/cdt.20160202103852.cx8O6CogYx/bcftools-1.2'
  dh_auto_build: make -j9 returned exit code 2
  debian/rules:15: recipe for target 'build' failed
  make: *** [build] Error 2

  [..]

The full build log is attached.


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby at debian.org / chris-lamb.co.uk
       `-
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