[Reproducible-builds] Bug#828115: lme4: FTBFS: dh_clean: Please specify the compatibility level in debian/compat

Sat Jun 25 08:32:14 UTC 2016

Source: lme4
Version: 1.1-12-1
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org

Dear Maintainer,

lme4 fails to build from source in unstable/amd64:

  [..]

  Preparing to unpack .../libjbig0_2.1-3.1_amd64.deb ...
  Unpacking libjbig0:amd64 (2.1-3.1) ...
  Selecting previously unselected package libtiff5:amd64.
  Preparing to unpack .../libtiff5_4.0.6-1_amd64.deb ...
  Unpacking libtiff5:amd64 (4.0.6-1) ...
  Selecting previously unselected package libxft2:amd64.
  Preparing to unpack .../libxft2_2.3.2-1_amd64.deb ...
  Unpacking libxft2:amd64 (2.3.2-1) ...
  Selecting previously unselected package libxss1:amd64.
  Preparing to unpack .../libxss1_1%3a1.2.2-1_amd64.deb ...
  Unpacking libxss1:amd64 (1:1.2.2-1) ...
  Selecting previously unselected package libtk8.6:amd64.
  Preparing to unpack .../libtk8.6_8.6.5-1_amd64.deb ...
  Unpacking libtk8.6:amd64 (8.6.5-1) ...
  Selecting previously unselected package libxt6:amd64.
  Preparing to unpack .../libxt6_1%3a1.1.5-1_amd64.deb ...
  Unpacking libxt6:amd64 (1:1.1.5-1) ...
  Selecting previously unselected package openssl.
  Preparing to unpack .../openssl_1.0.2h-1_amd64.deb ...
  Unpacking openssl (1.0.2h-1) ...
  Selecting previously unselected package ca-certificates.
  Preparing to unpack .../ca-certificates_20160104_all.deb ...
  Unpacking ca-certificates (20160104) ...
  Selecting previously unselected package r-base-core.
  Preparing to unpack .../r-base-core_3.3.1-1_amd64.deb ...
  Unpacking r-base-core (3.3.1-1) ...
  Selecting previously unselected package libgfortran-5-dev:amd64.
  Preparing to unpack .../libgfortran-5-dev_5.4.0-4_amd64.deb ...
  Unpacking libgfortran-5-dev:amd64 (5.4.0-4) ...
  Selecting previously unselected package gfortran-5.
  Preparing to unpack .../gfortran-5_5.4.0-4_amd64.deb ...
  Unpacking gfortran-5 (5.4.0-4) ...
  Selecting previously unselected package gfortran.
  Preparing to unpack .../gfortran_4%3a5.3.1-3_amd64.deb ...
  Unpacking gfortran (4:5.3.1-3) ...
  Selecting previously unselected package libblas-dev.
  Preparing to unpack .../libblas-dev_3.6.0-2_amd64.deb ...
  Unpacking libblas-dev (3.6.0-2) ...
  Selecting previously unselected package liblapack-dev.
  Preparing to unpack .../liblapack-dev_3.6.0-2_amd64.deb ...
  Unpacking liblapack-dev (3.6.0-2) ...
  Selecting previously unselected package libtinfo-dev:amd64.
  Preparing to unpack .../libtinfo-dev_6.0+20160319-2+b1_amd64.deb ...
  Unpacking libtinfo-dev:amd64 (6.0+20160319-2+b1) ...
  Selecting previously unselected package libncurses5-dev:amd64.
  Preparing to unpack .../libncurses5-dev_6.0+20160319-2+b1_amd64.deb ...
  Unpacking libncurses5-dev:amd64 (6.0+20160319-2+b1) ...
  Selecting previously unselected package libreadline6-dev:amd64.
  Preparing to unpack .../libreadline6-dev_6.3-8+b4_amd64.deb ...
  Unpacking libreadline6-dev:amd64 (6.3-8+b4) ...
  Selecting previously unselected package libreadline-dev:amd64.
  Preparing to unpack .../libreadline-dev_6.3-8+b4_amd64.deb ...
  Unpacking libreadline-dev:amd64 (6.3-8+b4) ...
  Selecting previously unselected package libjpeg62-turbo-dev:amd64.
  Preparing to unpack .../libjpeg62-turbo-dev_1%3a1.5.0-1_amd64.deb ...
  Unpacking libjpeg62-turbo-dev:amd64 (1:1.5.0-1) ...
  Selecting previously unselected package libjpeg-dev.
  Preparing to unpack .../libjpeg-dev_1%3a1.5.0-1_all.deb ...
  Unpacking libjpeg-dev (1:1.5.0-1) ...
  Selecting previously unselected package libpcre16-3:amd64.
  Preparing to unpack .../libpcre16-3_2%3a8.38-3.1_amd64.deb ...
  Unpacking libpcre16-3:amd64 (2:8.38-3.1) ...
  Selecting previously unselected package libpcre32-3:amd64.
  Preparing to unpack .../libpcre32-3_2%3a8.38-3.1_amd64.deb ...
  Unpacking libpcre32-3:amd64 (2:8.38-3.1) ...
  Selecting previously unselected package libpcrecpp0v5:amd64.
  Preparing to unpack .../libpcrecpp0v5_2%3a8.38-3.1_amd64.deb ...
  Unpacking libpcrecpp0v5:amd64 (2:8.38-3.1) ...
  Selecting previously unselected package libpcre3-dev:amd64.
  Preparing to unpack .../libpcre3-dev_2%3a8.38-3.1_amd64.deb ...
  Unpacking libpcre3-dev:amd64 (2:8.38-3.1) ...
  Selecting previously unselected package zlib1g-dev:amd64.
  Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2+b1_amd64.deb ...
  Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ...
  Selecting previously unselected package libpng-dev:amd64.
  Preparing to unpack .../libpng-dev_1.6.23-1_amd64.deb ...
  Unpacking libpng-dev:amd64 (1.6.23-1) ...
  Selecting previously unselected package libbz2-dev:amd64.
  Preparing to unpack .../libbz2-dev_1.0.6-8_amd64.deb ...
  Unpacking libbz2-dev:amd64 (1.0.6-8) ...
  Selecting previously unselected package liblzma-dev:amd64.
  Preparing to unpack .../liblzma-dev_5.1.1alpha+20120614-2.1_amd64.deb ...
  Unpacking liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ...
  Selecting previously unselected package icu-devtools.
  Preparing to unpack .../icu-devtools_55.1-7_amd64.deb ...
  Unpacking icu-devtools (55.1-7) ...
  Selecting previously unselected package libicu-dev:amd64.
  Preparing to unpack .../libicu-dev_55.1-7_amd64.deb ...
  Unpacking libicu-dev:amd64 (55.1-7) ...
  Selecting previously unselected package r-base-dev.
  Preparing to unpack .../r-base-dev_3.3.1-1_all.deb ...
  Unpacking r-base-dev (3.3.1-1) ...
  Selecting previously unselected package r-cran-lattice.
  Preparing to unpack .../r-cran-lattice_0.20-33-1_amd64.deb ...
  Unpacking r-cran-lattice (0.20-33-1) ...
  Selecting previously unselected package r-cran-matrix.
  Preparing to unpack .../r-cran-matrix_1.2-6-1_amd64.deb ...
  Unpacking r-cran-matrix (1.2-6-1) ...
  Selecting previously unselected package r-cran-nlme.
  Preparing to unpack .../r-cran-nlme_3.1.128-2_amd64.deb ...
  Unpacking r-cran-nlme (3.1.128-2) ...
  Selecting previously unselected package r-cran-mass.
  Preparing to unpack .../r-cran-mass_7.3-45-1_amd64.deb ...
  Unpacking r-cran-mass (7.3-45-1) ...
  Selecting previously unselected package r-cran-littler.
  Preparing to unpack .../r-cran-littler_0.3.0-3_amd64.deb ...
  Unpacking r-cran-littler (0.3.0-3) ...
  Selecting previously unselected package littler.
  Preparing to unpack .../littler_0.3.0-3_all.deb ...
  Unpacking littler (0.3.0-3) ...
  Selecting previously unselected package r-cran-pkgkitten.
  Preparing to unpack .../r-cran-pkgkitten_0.1.3-1_all.deb ...
  Unpacking r-cran-pkgkitten (0.1.3-1) ...
  Selecting previously unselected package r-cran-rcpp.
  Preparing to unpack .../r-cran-rcpp_0.12.5-1_amd64.deb ...
  Unpacking r-cran-rcpp (0.12.5-1) ...
  Selecting previously unselected package r-cran-rcppeigen.
  Preparing to unpack .../r-cran-rcppeigen_0.3.2.8.1-1_amd64.deb ...
  Unpacking r-cran-rcppeigen (0.3.2.8.1-1) ...
  Selecting previously unselected package r-cran-minqa.
  Preparing to unpack .../r-cran-minqa_1.2.4-1_amd64.deb ...
  Unpacking r-cran-minqa (1.2.4-1) ...
  Selecting previously unselected package libnlopt0:amd64.
  Preparing to unpack .../libnlopt0_2.4.2+dfsg-2+b1_amd64.deb ...
  Unpacking libnlopt0:amd64 (2.4.2+dfsg-2+b1) ...
  Selecting previously unselected package r-cran-nloptr.
  Preparing to unpack .../r-cran-nloptr_1.0.4-1_amd64.deb ...
  Unpacking r-cran-nloptr (1.0.4-1) ...
  Processing triggers for man-db (2.7.5-1) ...
  Processing triggers for mime-support (3.60) ...
  Processing triggers for libc-bin (2.22-12) ...
  Processing triggers for systemd (230-3) ...
  Setting up cdbs (0.4.142) ...
  Setting up zip (3.0-11) ...
  Setting up unzip (6.0-20) ...
  Setting up ucf (3.0036) ...
  Setting up libpaper1:amd64 (1.1.24+nmu4) ...

  Creating config file /etc/papersize with new version
  Setting up libpaper-utils (1.1.24+nmu4) ...
  Setting up xdg-utils (1.1.1-1) ...
  Setting up libgfortran3:amd64 (6.1.1-7) ...
  Setting up libblas-common (3.6.0-2) ...
  Setting up libblas3 (3.6.0-2) ...
  update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
  Setting up libpng16-16:amd64 (1.6.23-1) ...
  Setting up libfreetype6:amd64 (2.6.3-3+b1) ...
  Setting up fonts-dejavu-core (2.35-1) ...
  Setting up fontconfig-config (2.11.0-6.4) ...
  Setting up libfontconfig1:amd64 (2.11.0-6.4) ...
  Setting up libpixman-1-0:amd64 (0.33.6-1) ...
  Setting up libxau6:amd64 (1:1.0.8-1) ...
  Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ...
  Setting up libxcb1:amd64 (1.11.1-1) ...
  Setting up libx11-data (2:1.6.3-1) ...
  Setting up libx11-6:amd64 (2:1.6.3-1) ...
  Setting up libxcb-render0:amd64 (1.11.1-1) ...
  Setting up libxcb-shm0:amd64 (1.11.1-1) ...
  Setting up libxext6:amd64 (2:1.3.3-1) ...
  Setting up libxrender1:amd64 (1:0.9.9-2) ...
  Setting up libcairo2:amd64 (1.14.6-1+b1) ...
  Setting up libcurl3:amd64 (7.47.0-1) ...
  Setting up x11-common (1:7.7+15) ...
  update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
  invoke-rc.d: could not determine current runlevel
  invoke-rc.d: policy-rc.d denied execution of start.
  Setting up libice6:amd64 (2:1.0.9-1+b1) ...
  Setting up libjpeg62-turbo:amd64 (1:1.5.0-1) ...
  Setting up liblapack3 (3.6.0-2) ...
  update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
  Setting up fontconfig (2.11.0-6.4) ...
  Regenerating fonts cache... done.
  Setting up libthai-data (0.1.24-2) ...
  Setting up libdatrie1:amd64 (0.2.10-2) ...
  Setting up libthai0:amd64 (0.1.24-2) ...
  Setting up libpango-1.0-0:amd64 (1.40.1-1) ...
  Setting up libgraphite2-3:amd64 (1.3.8-1) ...
  Setting up libharfbuzz0b:amd64 (1.2.6-2) ...
  Setting up libpangoft2-1.0-0:amd64 (1.40.1-1) ...
  Setting up libpangocairo-1.0-0:amd64 (1.40.1-1) ...
  Setting up libsm6:amd64 (2:1.2.2-1+b1) ...
  Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ...
  Setting up libjbig0:amd64 (2.1-3.1) ...
  Setting up libtiff5:amd64 (4.0.6-1) ...
  Setting up libxft2:amd64 (2.3.2-1) ...
  Setting up libxss1:amd64 (1:1.2.2-1) ...
  Setting up libtk8.6:amd64 (8.6.5-1) ...
  Setting up libxt6:amd64 (1:1.1.5-1) ...
  Setting up openssl (1.0.2h-1) ...
  Setting up ca-certificates (20160104) ...
  Setting up r-base-core (3.3.1-1) ...

  Creating config file /etc/R/Renviron with new version
  Setting up libgfortran-5-dev:amd64 (5.4.0-4) ...
  Setting up gfortran-5 (5.4.0-4) ...
  Setting up gfortran (4:5.3.1-3) ...
  update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
  update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
  Setting up libblas-dev (3.6.0-2) ...
  update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
  Setting up liblapack-dev (3.6.0-2) ...
  update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
  Setting up libtinfo-dev:amd64 (6.0+20160319-2+b1) ...
  Setting up libncurses5-dev:amd64 (6.0+20160319-2+b1) ...
  Setting up libreadline6-dev:amd64 (6.3-8+b4) ...
  Setting up libreadline-dev:amd64 (6.3-8+b4) ...
  Setting up libjpeg62-turbo-dev:amd64 (1:1.5.0-1) ...
  Setting up libjpeg-dev (1:1.5.0-1) ...
  Setting up libpcre16-3:amd64 (2:8.38-3.1) ...
  Setting up libpcre32-3:amd64 (2:8.38-3.1) ...
  Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ...
  Setting up libpcre3-dev:amd64 (2:8.38-3.1) ...
  Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ...
  Setting up libpng-dev:amd64 (1.6.23-1) ...
  Setting up libbz2-dev:amd64 (1.0.6-8) ...
  Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ...
  Setting up icu-devtools (55.1-7) ...
  Setting up libicu-dev:amd64 (55.1-7) ...
  Setting up r-base-dev (3.3.1-1) ...
  Setting up r-cran-lattice (0.20-33-1) ...
  Setting up r-cran-matrix (1.2-6-1) ...
  Setting up r-cran-nlme (3.1.128-2) ...
  Setting up r-cran-mass (7.3-45-1) ...
  Setting up r-cran-littler (0.3.0-3) ...
  Setting up littler (0.3.0-3) ...
  Setting up r-cran-pkgkitten (0.1.3-1) ...
  Setting up r-cran-rcpp (0.12.5-1) ...
  Setting up r-cran-rcppeigen (0.3.2.8.1-1) ...
  Setting up r-cran-minqa (1.2.4-1) ...
  Setting up libnlopt0:amd64 (2.4.2+dfsg-2+b1) ...
  Setting up r-cran-nloptr (1.0.4-1) ...
  Setting up lme4-build-deps (1.1-12-1) ...
  Processing triggers for libc-bin (2.22-12) ...
  Processing triggers for systemd (230-3) ...
  Processing triggers for ca-certificates (20160104) ...
  Updating certificates in /etc/ssl/certs...
  173 added, 0 removed; done.
  Running hooks in /etc/ca-certificates/update.d...
  done.

  **************************************************************************************
  ** Environment                                                                      **
  **************************************************************************************

  PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
  HOSTNAME=72152254431f
  TERM=xterm
  PAGER=more
  DISPLAY=:0
  DOCKER_IMAGE=lamby-debian-sid
  DEB_BUILD_OPTIONS=parallel=9
  PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip
  HOME=/home/lamby
  LOGNAME=lamby
  SHLVL=1
  PWD=/home/lamby/temp/cdt.20160625082652.iOTreHWmkD.lme4/lme4-1.1-12
  OLDPWD=/home/lamby/temp/cdt.20160625082652.iOTreHWmkD.lme4
  GPG_TTY=/dev/console
  QUILT_PATCHES=debian/patches
  QUILT_NO_DIFF_INDEX=1
  QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index
  DEBEMAIL=lamby at debian.org
  DEBFULLNAME=Chris Lamb
  EDITOR=vim
  LESS=-cgiFx4M
  BLASTER=A220 I5 D1 H5 P330 T6
  _=/usr/bin/env

  **************************************************************************************
  ** Building lme4 1.1-12-1 on amd64                                                  **
  **************************************************************************************

   dpkg-buildpackage -rfakeroot -D -us -uc -b
  dpkg-buildpackage: info: source package lme4
  dpkg-buildpackage: info: source version 1.1-12-1
  dpkg-buildpackage: info: source distribution unstable
  dpkg-buildpackage: info: source changed by Dirk Eddelbuettel <edd at debian.org>
   dpkg-source --before-build lme4-1.1-12
  dpkg-buildpackage: info: host architecture amd64
   fakeroot debian/rules clean
  CDBS WARNING:    simple-patchsys.mk is deprecated since 0.4.85 - please use source format 3.0 (quilt) instead
  test -x debian/rules
  /usr/bin/make -f debian/rules reverse-config
  make[1]: Entering directory '/home/lamby/temp/cdt.20160625082652.iOTreHWmkD.lme4/lme4-1.1-12'
  CDBS WARNING:    simple-patchsys.mk is deprecated since 0.4.85 - please use source format 3.0 (quilt) instead
  make[1]: 'reverse-config' is up to date.
  make[1]: Leaving directory '/home/lamby/temp/cdt.20160625082652.iOTreHWmkD.lme4/lme4-1.1-12'
  if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
  patches: 
  if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
  if [ "reverse-patches" != "reverse-patches" ] ; then \
  	/usr/bin/make -f debian/rules update-config ; \
  fi
  for dir in debian/patches ; do \
      rm -f $dir/*.log ; \
  done
  dh_clean 
  dh_clean: Please specify the compatibility level in debian/compat
  /usr/share/cdbs/1/rules/debhelper.mk:217: recipe for target 'clean' failed
  make: *** [clean] Error 2

  [..]

The full build log is attached.

Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby at debian.org / chris-lamb.co.uk
       `-
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