[med-svn] [Git][med-team/pbseqlib][master] 7 commits: Upstream has tagged a release so use proper watch file

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / pbseqlib


Commits:
dec8ce2a by Andreas Tille at 2018-06-26T08:40:18+02:00
Upstream has tagged a release so use proper watch file

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c193ee9e by Andreas Tille at 2018-06-26T08:45:49+02:00
Exclude binary tools from upstream tarball

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004f0d13 by Andreas Tille at 2018-06-26T08:49:25+02:00
New upstream version 5.3.1+dfsg
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eaf5ee0c by Andreas Tille at 2018-06-26T08:49:29+02:00
Update upstream source from tag 'upstream/5.3.1+dfsg'

Update to upstream version '5.3.1+dfsg'
with Debian dir 2e9efbe8288b40eab7d2a037d26e79001735a889
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c90ce234 by Andreas Tille at 2018-06-26T09:12:56+02:00
Refresh patch

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c23b113c by Andreas Tille at 2018-06-26T09:31:09+02:00
Set PREFIX_INC=.. to make sure header files will be found

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51880cf4 by Andreas Tille at 2018-06-26T09:38:10+02:00
Re-activate uncommented section of patch

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19 changed files:

- + .clang-format
- .gitignore
- + .gitmodules
- + CMakeLists.txt
- + DEVELOPER.md
- README.md
- alignment/MappingMetrics.cpp
- alignment/MappingMetrics.hpp
- alignment/algorithms/alignment/AffineGuidedAlign.hpp
- alignment/algorithms/alignment/AffineKBandAlign.hpp
- alignment/algorithms/alignment/AlignmentFormats.hpp
- alignment/algorithms/alignment/AlignmentUtils.cpp
- alignment/algorithms/alignment/AlignmentUtils.hpp
- alignment/algorithms/alignment/AlignmentUtilsImpl.hpp
- alignment/algorithms/alignment/BaseScoreFunction.cpp
- alignment/algorithms/alignment/BaseScoreFunction.hpp
- alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp
- alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp
- alignment/algorithms/alignment/ExtendAlign.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pbseqlib/compare/b3e3f9e72bf7497e7778f335e52b8967c22446a6...51880cf42b13a7c2650f1707becc2765502eabb0

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View it on GitLab: https://salsa.debian.org/med-team/pbseqlib/compare/b3e3f9e72bf7497e7778f335e52b8967c22446a6...51880cf42b13a7c2650f1707becc2765502eabb0
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