[med-svn] [Git][med-team/adapterremoval][upstream] New upstream version 2.3.1

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / adapterremoval


Commits:
c071ae97 by Steffen Moeller at 2019-07-27T10:18:49Z
New upstream version 2.3.1
- - - - -


30 changed files:

- .gitignore
- AdapterRemoval.1
- CHANGES.md
- Makefile
- README.md
- docs/conf.py
- docs/manpage.rst
- src/alignment.cpp
- + src/alignment_tables.cpp
- + src/alignment_tables.hpp
- + src/barcode_table.cpp
- + src/barcode_table.hpp
- src/demultiplex.cpp
- src/demultiplex.hpp
- src/fastq.cpp
- src/fastq.hpp
- src/fastq_io.cpp
- src/fastq_io.hpp
- src/linereader.cpp
- src/main.hpp
- src/main_adapter_id.cpp
- src/main_adapter_rm.cpp
- + src/managed_writer.cpp
- + src/managed_writer.hpp
- src/trimmed_reads.cpp
- src/userconfig.cpp
- src/userconfig.hpp
- tests/regression/misc/bad_args/demux_without_barcodes/info.json
- tests/regression/misc/bad_args/fewer_file1/info.json
- tests/regression/misc/bad_args/fewer_file2/info.json


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/adapterremoval/commit/c071ae9752470fdb713daf73cf0e369f7e8537e0

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View it on GitLab: https://salsa.debian.org/med-team/adapterremoval/commit/c071ae9752470fdb713daf73cf0e369f7e8537e0
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