[med-svn] [Git][med-team/snakemake][master] 8 commits: New upstream version 5.8.2

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / snakemake


Commits:
729f363d by Michael R. Crusoe at 2019-12-16T11:19:00Z
New upstream version 5.8.2
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76e13496 by Michael R. Crusoe at 2019-12-16T11:19:16Z
Update upstream source from tag 'upstream/5.8.2'

Update to upstream version '5.8.2'
with Debian dir 0473d05d09a8c0adbf7c436f3b6538e5ff5de064
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59ae41e7 by Michael R. Crusoe at 2019-12-16T11:23:10Z
5.8.2-1

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bab44c2c by Michael R. Crusoe at 2020-01-01T13:05:52Z
routine-update: New upstream version

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a41c77bf by Michael R. Crusoe at 2020-01-01T13:05:53Z
New upstream version 5.9.1
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2a0a9931 by Michael R. Crusoe at 2020-01-01T13:06:02Z
Update upstream source from tag 'upstream/5.9.1'

Update to upstream version '5.9.1'
with Debian dir 2c42240972fe9dd24628483d43ed7912b756b22b
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0e65b960 by Michael R. Crusoe at 2020-01-01T14:22:04Z
exclude test_env_modules

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8aeb7045 by Michael R. Crusoe at 2020-01-01T15:06:55Z
5.9.1-1

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30 changed files:

- + .github/CODEOWNERS
- .github/workflows/main.yml
- CHANGELOG.rst
- debian/changelog
- debian/patches/0012-reproducible-build.patch
- debian/patches/python3
- debian/rules
- debian/source/lintian-overrides
- debian/tests/run-unit-test
- docs/executing/caching.rst
- docs/index.rst
- docs/snakefiles/deployment.rst
- docs/snakefiles/rules.rst
- docs/tutorial/setup.rst
- docs/tutorial/short.rst
- misc/vim/syntax/snakemake.vim
- + motoState.p
- setup.py
- snakemake/__init__.py
- snakemake/_version.py
- snakemake/caching/__init__.py
- snakemake/caching/hash.py
- snakemake/caching/local.py
- snakemake/caching/remote.py
- snakemake/cwl.py
- snakemake/dag.py
- + snakemake/deployment/__init__.py
- snakemake/conda.py → snakemake/deployment/conda.py
- + snakemake/deployment/env_modules.py
- snakemake/singularity.py → snakemake/deployment/singularity.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/snakemake/compare/40c648afe786196da8c53d8fc96b636280715938...8aeb70459252ee398e6c890c615826236f69a0f3

-- 
View it on GitLab: https://salsa.debian.org/med-team/snakemake/compare/40c648afe786196da8c53d8fc96b636280715938...8aeb70459252ee398e6c890c615826236f69a0f3
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