[med-svn] [Git][med-team/phyx][master] 11 commits: routine-update: New upstream version

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / phyx


Commits:
93ff8c3b by Nilesh Patra at 2021-04-22T15:09:06+05:30
routine-update: New upstream version

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394da5de by Nilesh Patra at 2021-04-22T15:09:08+05:30
New upstream version 1.2.1+ds
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fade63ed by Nilesh Patra at 2021-04-22T15:09:15+05:30
Update upstream source from tag 'upstream/1.2.1+ds'

Update to upstream version '1.2.1+ds'
with Debian dir 7ea7ec53ee1a6b9c9c4bbee5c49a314dd2837124
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dc509896 by Nilesh Patra at 2021-04-22T15:09:16+05:30
routine-update: Standards-Version: 4.5.1

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6db26bcc by Nilesh Patra at 2021-04-22T15:09:16+05:30
routine-update: debhelper-compat 13

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5b659f26 by Nilesh Patra at 2021-04-22T15:18:04+05:30
Refresh and remove merged patches

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ae001adb by Nilesh Patra at 2021-04-22T15:25:41+05:30
changes prefix to PREFIX (capitalised in Makefile.in)

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356213f0 by Nilesh Patra at 2021-04-22T15:29:40+05:30
Enhance d/u/metadata

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b2d41bf0 by Nilesh Patra at 2021-04-22T15:53:56+05:30
d/p/hardening.patch: Propagate hardening options

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74b86b55 by Nilesh Patra at 2021-04-22T10:48:59+00:00
d/tests/run-unit-test: Fix file locations

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6782f8ab by Nilesh Patra at 2021-04-22T11:04:27+00:00
Add TODO

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21 changed files:

- .gitignore
- + .travis.yml
- README.md
- debian/changelog
- debian/control
- − debian/patches/gcc10.patch
- + debian/patches/hardening.patch
- debian/patches/link_lnlopt.patch
- debian/patches/series
- debian/rules
- debian/tests/run-unit-test
- debian/upstream/metadata
- + doc/Programs.md
- + example_files/pxtrt_example/taxa_to_retain.txt
- + example_files/pxtrt_example/yule_100taxa.tre
- src/Makefile.in
- + src/TEST/AA_5tax_interleaved.NEX
- + src/TEST/Binary_5tax.fa
- src/TEST/Concatenated.phy → src/TEST/Concatenated.fa
- + src/TEST/figtree.tre
- + src/TEST/linebreak.tre


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/phyx/-/compare/f968a9cf325a67fc2e3cdadc035e85b35b5f93f7...6782f8ab582bb5e54febe955d8720a2fcf8922ae

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View it on GitLab: https://salsa.debian.org/med-team/phyx/-/compare/f968a9cf325a67fc2e3cdadc035e85b35b5f93f7...6782f8ab582bb5e54febe955d8720a2fcf8922ae
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