[med-svn] [Git][med-team/rna-star][master] [skip ci] d/p/do-not-enforce-avx2.patch: Remove usage of -mavx2 by default

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / rna-star


Commits:
5e44499e by Nilesh Patra at 2021-08-18T12:17:51+05:30
[skip ci] d/p/do-not-enforce-avx2.patch: Remove usage of -mavx2 by default

- - - - -


2 changed files:

- + debian/patches/do-not-enforce-avx2.patch
- debian/patches/series


Changes:

=====================================
debian/patches/do-not-enforce-avx2.patch
=====================================
@@ -0,0 +1,24 @@
+Description: Do not enforce -mavx2
+Author: Nilesh Patra <nilesh at debian.org>
+Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=992270
+Forwarded: not-needed
+Last-Update: 2021-08-18
+--- a/source/Makefile
++++ b/source/Makefile
+@@ -30,7 +30,6 @@
+ # Defaults, can be overridden by make arguments or environment
+ CXXFLAGS ?= -pipe -Wall -Wextra
+ CFLAGS ?= -pipe -Wall -Wextra -O3
+-CXXFLAGS_SIMD ?= -mavx2
+ 
+ # Unconditionally set essential flags and optimization options
+ CXXFLAGS_common := -std=c++11 -fopenmp $(COMPTIMEPLACE) $(CCFLAGS_common_add)
+@@ -92,7 +91,7 @@
+ 
+ opal/opal.o : opal/opal.cpp opal/opal.h
+ 	cd opal && \
+-	$(CXX) -c -I./ -std=c++11 $(CPPFLAGS) $(CXXFLAGS) $(CXXFLAGSextra) $(CXXFLAGS_SIMD) opal.cpp
++	$(CXX) -c -I./ -std=c++11 $(CPPFLAGS) $(CXXFLAGS) $(CXXFLAGSextra) opal.cpp
+ 
+ .PHONY: clean
+ clean:


=====================================
debian/patches/series
=====================================
@@ -2,3 +2,4 @@ donotuse_own_htslib.patch
 mips_shm_noreserve.patch
 reproducible.patch
 mathRoutinesNotInScope.patch
+do-not-enforce-avx2.patch



View it on GitLab: https://salsa.debian.org/med-team/rna-star/-/commit/5e44499e8104843f0fdd81e427bea803a0cb5fb5

-- 
View it on GitLab: https://salsa.debian.org/med-team/rna-star/-/commit/5e44499e8104843f0fdd81e427bea803a0cb5fb5
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