[med-svn] [Git][med-team/python-pysam][master] 13 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / python-pysam


Commits:
a95f6fca by Andreas Tille at 2021-12-07T09:21:04+01:00
routine-update: New upstream version

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b9d055f3 by Andreas Tille at 2021-12-07T09:21:05+01:00
New upstream version 0.18.0+ds
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b52427a0 by Andreas Tille at 2021-12-07T09:21:10+01:00
Update upstream source from tag 'upstream/0.18.0+ds'

Update to upstream version '0.18.0+ds'
with Debian dir 56361846805f33ba070134821867efdb2fd1768a
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eb7774ee by Andreas Tille at 2021-12-07T09:21:13+01:00
routine-update: No tab in license text

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a4ed6980 by Andreas Tille at 2021-12-07T09:21:16+01:00
Update renamed lintian tag names in lintian overrides.

Changes-By: lintian-brush
Fixes: lintian: renamed-tag
See-also: https://lintian.debian.org/tags/renamed-tag.html

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fcf53a2a by Andreas Tille at 2021-12-07T09:21:19+01:00
Avoid explicitly specifying -Wl,--as-needed linker flag.

Changes-By: lintian-brush
Fixes: lintian: debian-rules-uses-as-needed-linker-flag
See-also: https://lintian.debian.org/tags/debian-rules-uses-as-needed-linker-flag.html

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0518ef02 by Andreas Tille at 2021-12-07T09:21:26+01:00
Remove constraints unnecessary since buster

* Build-Depends: Drop versioned constraint on bcftools, libhts-dev and samtools.

Changes-By: deb-scrub-obsolete
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e39be3eb by Andreas Tille at 2021-12-07T15:07:01+01:00
Drop outdated and unused tests

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ad74243e by Andreas Tille at 2021-12-07T15:13:19+01:00
Remove also win32 dir from upstream code (and when beeing at it also .github and .gitignore)

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671ef8fb by Andreas Tille at 2021-12-07T15:13:52+01:00
New upstream version 0.18.0+ds
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634fc36f by Andreas Tille at 2021-12-07T15:13:57+01:00
Update upstream source from tag 'upstream/0.18.0+ds'

Update to upstream version '0.18.0+ds'
with Debian dir fbe513c606d10f93e294607f45f5cce098219fe3
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46350584 by Andreas Tille at 2021-12-07T15:14:25+01:00
Upload to experimental

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b6c1f750 by Andreas Tille at 2021-12-07T15:36:58+01:00
Remove superflous file patterns from debian/copyright

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23 changed files:

- − .github/workflows/ci.yaml
- − .github/workflows/release.yaml
- − .gitignore
- + Containerfile
- README.rst
- bcftools/abuf.c
- bcftools/abuf.c.pysam.c
- bcftools/bam2bcf.c
- bcftools/bam2bcf.c.pysam.c
- bcftools/bam2bcf.h
- bcftools/bam2bcf_indel.c
- bcftools/bam2bcf_indel.c.pysam.c
- bcftools/bcftools.h
- bcftools/consensus.c
- bcftools/consensus.c.pysam.c
- bcftools/convert.c
- bcftools/convert.c.pysam.c
- bcftools/convert.h
- bcftools/csq.c
- bcftools/csq.c.pysam.c
- bcftools/mcall.c
- bcftools/mcall.c.pysam.c
- bcftools/mpileup.c


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/python-pysam/-/compare/a830118e5306848fb8a55a6100bc95c87fedce04...b6c1f750168fdea1cd33b55bf5ec4e6341a466a2

-- 
View it on GitLab: https://salsa.debian.org/med-team/python-pysam/-/compare/a830118e5306848fb8a55a6100bc95c87fedce04...b6c1f750168fdea1cd33b55bf5ec4e6341a466a2
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