Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
2060f5cd by Andreas Tille at 2021-12-16T13:42:22+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,68 +1,69 @@
-Last-Update: Thu, 16 Dec 2021 01:42:04 +0000
+Last-Update: Thu, 16 Dec 2021 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 171 | {imaging,covid-19} |
- orthanc | 96 | {covid-19,practice,imaging} |
- orthanc-wsi | 50 | {covid-19,oncology,his,laboratory,practice,imaging} |
- amide | 32 | {imaging} |
- dcm2niix | 28 | {imaging} |
- htsjdk | 28 | {bio-dev} |
- dicom3tools | 27 | {imaging} |
- dicomscope | 22 | {imaging} |
+ dcmtk | 168 | {imaging,covid-19} |
+ orthanc | 93 | {covid-19,practice,imaging} |
+ orthanc-wsi | 49 | {covid-19,oncology,his,laboratory,practice,imaging} |
+ amide | 31 | {imaging} |
+ htsjdk | 30 | {bio-dev} |
+ dicom3tools | 28 | {imaging} |
+ dcm2niix | 27 | {imaging} |
+ dicomscope | 25 | {imaging} |
gdcm | 20 | {imaging-dev} |
gdcm | 18 | {imaging,covid-19} |
invesalius | 16 | {imaging} |
+ minc-tools | 15 | {imaging} |
+ openslide | 15 | {imaging} |
gnumed-server | 14 | {covid-19,practice} |
- minc-tools | 14 | {imaging} |
- openslide | 14 | {imaging} |
adun.app | 13 | {bio} |
mrtrix3 | 13 | {imaging} |
- orthanc-webviewer | 13 | {imaging} |
pixelmed | 13 | {imaging} |
gdcm | 12 | {imaging-dev} |
+ orthanc-webviewer | 12 | {imaging} |
+ dicomnifti | 11 | {imaging} |
+ insighttoolkit4 | 11 | {imaging-dev} |
mia | 11 | {imaging} |
ngs-sdk | 11 | {bio-dev} |
plastimatch | 11 | {imaging} |
- dicomnifti | 10 | {imaging} |
- insighttoolkit4 | 10 | {imaging-dev} |
+ jebl2 | 10 | {bio-dev} |
biojava-live | 9 | {bio-dev} |
- jebl2 | 9 | {bio-dev} |
- king | 8 | {typesetting,imaging} |
- nifticlib | 8 | {imaging} |
+ king | 9 | {typesetting,imaging} |
+ nifticlib | 9 | {imaging} |
lagan | 7 | {bio} |
ngs-sdk | 7 | {bio-dev} |
- nifticlib | 7 | {imaging-dev} |
libncl | 6 | {bio} |
librg-utils-perl | 6 | {bio} |
- openslide | 6 | {imaging-dev} |
- orthanc-dicomweb | 6 | {covid-19,imaging} |
+ nifticlib | 6 | {imaging-dev} |
rambo-k | 6 | {bio} |
treeview | 6 | {bio,bio-phylogeny} |
+ dicompyler | 5 | {oncology} |
embassy-domalign | 5 | {cloud,bio} |
libminc | 5 | {imaging-dev} |
nifti2dicom | 5 | {imaging} |
+ openslide | 5 | {imaging-dev} |
+ orthanc-dicomweb | 5 | {covid-19,imaging} |
+ oscar | 5 | {data,tools,practice} |
runcircos-gui | 5 | {bio} |
salmon | 5 | {bio,covid-19} |
tracetuner | 5 | {bio} |
arden | 4 | {bio,cloud} |
- dicompyler | 4 | {oncology} |
+ beast-mcmc | 4 | {bio,bio-phylogeny} |
elastix | 4 | {imaging} |
embassy-domainatrix | 4 | {cloud,bio} |
embassy-domsearch | 4 | {cloud,bio} |
melting | 4 | {cloud,bio} |
ngs-sdk | 4 | {bio-dev} |
nifti2dicom | 4 | {imaging} |
+ nipype | 4 | {imaging,imaging-dev} |
orthanc-mysql | 4 | {imaging} |
- orthanc-postgresql | 4 | {imaging} |
- oscar | 4 | {data,tools,practice} |
phyutility | 4 | {cloud,bio} |
saint | 4 | {bio} |
sibsim4 | 4 | {bio,cloud} |
stacks | 4 | {bio} |
staden | 4 | {bio} |
anfo | 3 | {bio,cloud} |
- beast-mcmc | 3 | {bio,bio-phylogeny} |
+ bart-view | 3 | {imaging} |
bio-tradis | 3 | {bio,bio-dev} |
bitseq | 3 | {bio} |
brig | 3 | {bio} |
@@ -78,8 +79,8 @@ Last-Update: Thu, 16 Dec 2021 01:42:04 +0000
librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
mhap | 3 | {bio,bio-ngs} |
- nipype | 3 | {imaging,imaging-dev} |
obitools | 3 | {bio} |
+ orthanc-postgresql | 3 | {imaging} |
proalign | 3 | {bio,bio-phylogeny} |
pymia | 3 | {imaging-dev} |
rdp-classifier | 3 | {bio} |
@@ -87,12 +88,11 @@ Last-Update: Thu, 16 Dec 2021 01:42:04 +0000
spread-phy | 3 | {bio,bio-phylogeny} |
zalign | 3 | {cloud,bio} |
assemblytics | 2 | {bio} |
- atropos | 2 | {bio} |
- bart-view | 2 | {imaging} |
biomaj3-cli | 2 | {cloud} |
blimps | 2 | {bio} |
cat-bat | 2 | {bio,covid-19} |
clonalframeml | 2 | {bio,covid-19} |
+ cmtk | 2 | {imaging} |
delly | 2 | {covid-19,bio} |
fastml | 2 | {bio} |
fsm-lite | 2 | {bio} |
@@ -104,6 +104,7 @@ Last-Update: Thu, 16 Dec 2021 01:42:04 +0000
microbegps | 2 | {bio} |
orthanc-gdcm | 2 | {imaging} |
orthanc-python | 2 | {covid-19} |
+ papyrus | 2 | {imaging-dev} |
pigx-rnaseq | 2 | {bio,covid-19} |
piler | 2 | {bio} |
placnet | 2 | {bio} |
@@ -123,7 +124,7 @@ Last-Update: Thu, 16 Dec 2021 01:42:04 +0000
tvc | 2 | {bio} |
varna | 2 | {bio} |
acedb | 1 | {cloud,bio} |
- cmtk | 1 | {imaging} |
+ atropos | 1 | {bio} |
cufflinks | 1 | {bio,cloud} |
dextractor | 1 | {bio,covid-19} |
emboss-explorer | 1 | {bio} |
@@ -133,10 +134,8 @@ Last-Update: Thu, 16 Dec 2021 01:42:04 +0000
libncl | 1 | {bio-dev} |
metaphlan2 | 1 | {bio} |
opencfu | 1 | {laboratory} |
- papyrus | 1 | {imaging-dev} |
pique | 1 | {bio} |
pplacer | 1 | {covid-19,bio,bio-phylogeny} |
- python-wdlparse | 1 | {bio-dev} |
shovill | 1 | {covid-19,bio} |
skesa | 1 | {bio} |
spaln | 1 | {covid-19,bio} |
@@ -197,6 +196,7 @@ Last-Update: Thu, 16 Dec 2021 01:42:04 +0000
pbseqlib | 0 | {bio-dev} |
python-seqcluster | 0 | {covid-19,bio-dev} |
python-seqcluster | 0 | {bio} |
+ python-wdlparse | 0 | {bio-dev} |
resfinder-db | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2060f5cd7a8d4e2c7d0efd69e412be632f9ecf26
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2060f5cd7a8d4e2c7d0efd69e412be632f9ecf26
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