[med-svn] [Git][med-team/igv][master] 7 commits: Repacking to exclude HTML files with very long lines

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / igv


Commits:
06fd58b5 by Pierre Gruet at 2021-12-23T16:16:25+01:00
Repacking to exclude HTML files with very long lines

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a5cf43a2 by Pierre Gruet at 2021-12-23T16:19:26+01:00
New upstream version 2.11.9+dfsg
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59eecee4 by Pierre Gruet at 2021-12-23T16:22:33+01:00
Update upstream source from tag 'upstream/2.11.9+dfsg'

Update to upstream version '2.11.9+dfsg'
with Debian dir 9e90c836419177d8479bec626a89188a9b02ed4c
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4ad2cb1b by Pierre Gruet at 2021-12-23T16:45:02+01:00
Don't run tests using files in test/data/blat, which we removed

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54676bb9 by Pierre Gruet at 2021-12-23T16:45:13+01:00
Refreshing patches

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db908ca3 by Pierre Gruet at 2021-12-23T16:45:23+01:00
Updating changelog

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15792a10 by Pierre Gruet at 2021-12-23T17:19:15+01:00
Upload to unstable

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30 changed files:

- build.gradle
- debian/changelog
- debian/copyright
- + debian/patches/dont_parse_glat_output_in_tests.patch
- debian/patches/gradle_dependencies.patch
- debian/patches/jide_dependency.patch
- debian/patches/old_gradle_name.patch
- debian/patches/series
- debian/patches/skip_tests_network.patch
- scripts/readme.txt
- src/main/java/module-info.java
- src/main/java/org/broad/igv/DirectoryManager.java
- src/main/java/org/broad/igv/Globals.java
- src/main/java/org/broad/igv/aws/S3LoadDialog.java
- src/main/java/org/broad/igv/batch/BatchRunner.java
- src/main/java/org/broad/igv/batch/CommandExecutor.java
- src/main/java/org/broad/igv/batch/CommandListener.java
- src/main/java/org/broad/igv/bbfile/BBFileHeader.java
- src/main/java/org/broad/igv/bbfile/BBFileReader.java
- src/main/java/org/broad/igv/bbfile/BBTotalSummaryBlock.java
- src/main/java/org/broad/igv/bbfile/BBZoomLevelFormat.java
- src/main/java/org/broad/igv/bbfile/BBZoomLevelHeader.java
- src/main/java/org/broad/igv/bbfile/BBZoomLevels.java
- src/main/java/org/broad/igv/bbfile/BPTree.java
- src/main/java/org/broad/igv/bbfile/BPTreeChildNode.java
- src/main/java/org/broad/igv/bbfile/BPTreeChildNodeItem.java
- src/main/java/org/broad/igv/bbfile/BPTreeHeader.java
- src/main/java/org/broad/igv/bbfile/BPTreeLeafNode.java
- src/main/java/org/broad/igv/bbfile/BPTreeLeafNodeItem.java
- src/main/java/org/broad/igv/bbfile/BedFeature.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/d9ff8a47c7ee89350bdaa758465b7a8e83f79d6a...15792a105d7fd1742f2dc0cdaca46d7b1a33abe3

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View it on GitLab: https://salsa.debian.org/med-team/igv/-/compare/d9ff8a47c7ee89350bdaa758465b7a8e83f79d6a...15792a105d7fd1742f2dc0cdaca46d7b1a33abe3
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