[med-svn] [Git][med-team/pbcopper][master] 7 commits: routine-update: New upstream version

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / pbcopper


Commits:
afac726e by Michael R. Crusoe at 2020-12-23T18:17:57+01:00
routine-update: New upstream version

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3f036d0c by Michael R. Crusoe at 2020-12-23T18:17:58+01:00
New upstream version 1.9.0+dfsg
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0f3b7ca2 by Michael R. Crusoe at 2020-12-23T18:17:59+01:00
Update upstream source from tag 'upstream/1.9.0+dfsg'

Update to upstream version '1.9.0+dfsg'
with Debian dir 1fdaa85c814bc83be18e0de856765bb054b56129
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fd5576c9 by Michael R. Crusoe at 2020-12-23T18:18:00+01:00
routine-update: Standards-Version: 4.5.1

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0a336303 by Michael R. Crusoe at 2021-01-21T13:43:18+01:00
Upstream now uses simde, adapt accordingly

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4080d87f by Michael R. Crusoe at 2021-01-21T13:44:19+01:00
remove unused patch

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8b29001d by Michael R. Crusoe at 2021-01-21T14:24:17+01:00
bump SO version

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30 changed files:

- CHANGELOG.md
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/series
- − debian/patches/simde-ppc64el.patch
- debian/patches/simde.patch
- include/meson.build
- include/pbcopper/PbcopperConfig.h
- + include/pbcopper/align/EdlibAlign.h
- include/pbcopper/data/Cigar.h
- include/pbcopper/data/FrameEncoders.h
- + include/pbcopper/data/IntervalTree.h
- include/pbcopper/data/Strand.h
- + include/pbcopper/parallel/ThreadCount.h
- include/pbcopper/pbmer/KFGraph.h
- + include/pbcopper/poa/PoaConsensus.h
- + include/pbcopper/poa/PoaGraph.h
- + include/pbcopper/poa/RangeFinder.h
- + include/pbcopper/poa/SparsePoa.h
- + include/pbcopper/third-party/ksw2/LICENSE.txt
- + include/pbcopper/third-party/ksw2/kalloc.h
- + include/pbcopper/third-party/ksw2/ksw2.h
- include/pbcopper/utility/Alarm.h
- include/pbcopper/utility/SequenceUtils.h
- − include/pbcopper/utility/StringView.h
- meson.build
- + src/align/EdlibAlign.cpp
- src/align/cssw/ssw.c
- src/align/cssw/ssw.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pbcopper/-/compare/d9b3e96b2bce1ea4bede00e3197942ec150e0689...8b29001d96e062ca2049a93ed773463b97bf94bf

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View it on GitLab: https://salsa.debian.org/med-team/pbcopper/-/compare/d9b3e96b2bce1ea4bede00e3197942ec150e0689...8b29001d96e062ca2049a93ed773463b97bf94bf
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