[med-svn] [Git][med-team/mcaller][master] Minor change in run-unit-test

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / mcaller


Commits:
e32f3b56 by Nilesh Patra at 2021-06-21T13:58:42+00:00
Minor change in run-unit-test

- - - - -


1 changed file:

- debian/tests/run-unit-test


Changes:

=====================================
debian/tests/run-unit-test
=====================================
@@ -15,11 +15,11 @@ cp -a ${CUR_DIR}/testdata "${AUTOPKGTEST_TMP}"
 cd "${AUTOPKGTEST_TMP}"
 mkdir -p model_data
 
-cp -a ${CUR_DIR}/*pkl model_data
+cp -a ${CUR_DIR}/*.pkl .
 
-mCaller -p testdata/test_positions_A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d model_data/r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq
-mCaller -p testdata/test_positions_m6A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d model_data/r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq
-mCaller -p testdata/test_positions.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -t 4 --train -f testdata/masonread1.fastq
+mCaller -p testdata/test_positions_A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq
+mCaller -p testdata/test_positions_m6A.txt -r testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv -d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq
+mCaller -p testdata/test_positions.txt -r testdata/pb_ecoli_polished_assembly.fasta -d r95_twobase_model_NN_6_m6A.pkl -e testdata/masonread1.eventalign.tsv -t 4 --train -f testdata/masonread1.fastq
 
 rm -rf model_data
 rm -rf testdata



View it on GitLab: https://salsa.debian.org/med-team/mcaller/-/commit/e32f3b56f4ce99e472ef52028ec434f9a5110056

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View it on GitLab: https://salsa.debian.org/med-team/mcaller/-/commit/e32f3b56f4ce99e472ef52028ec434f9a5110056
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