[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille (@tille) gitlab at salsa.debian.org
Tue Jun 29 14:42:24 BST 2021



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
08a7b301 by Andreas Tille at 2021-06-29T13:42:20+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,55 +1,58 @@
-Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
+Last-Update: Tue, 29 Jun 2021 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    168 | {covid-19,imaging}                                  | 
- orthanc                       |     86 | {imaging,covid-19,practice}                         | 
- orthanc-wsi                   |     44 | {oncology,laboratory,imaging,covid-19,his,practice} | 
- gdcm                          |     39 | {imaging-dev}                                       | 
- htsjdk                        |     26 | {bio-dev}                                           | 
- amide                         |     25 | {imaging}                                           | 
- openslide                     |     22 | {imaging}                                           | 
- dicom3tools                   |     20 | {imaging}                                           | 
- dicomscope                    |     19 | {imaging}                                           | 
- dcm2niix                      |     17 | {imaging}                                           | 
- odin                          |     15 | {imaging,imaging-dev}                               | 
- ngs-sdk                       |     14 | {bio-dev}                                           | 
- orthanc-webviewer             |     14 | {imaging}                                           | 
- gdcm                          |     13 | {covid-19,imaging}                                  | 
+ dcmtk                         |    173 | {covid-19,imaging}                                  | 
+ orthanc                       |     91 | {imaging,covid-19,practice}                         | 
+ orthanc-wsi                   |     49 | {oncology,laboratory,imaging,covid-19,his,practice} | 
+ gdcm                          |     36 | {imaging-dev}                                       | 
+ htsjdk                        |     28 | {bio-dev}                                           | 
+ amide                         |     26 | {imaging}                                           | 
+ openslide                     |     23 | {imaging}                                           | 
+ dicom3tools                   |     22 | {imaging}                                           | 
+ dicomscope                    |     20 | {imaging}                                           | 
+ dcm2niix                      |     19 | {imaging}                                           | 
+ odin                          |     17 | {imaging,imaging-dev}                               | 
+ gdcm                          |     15 | {covid-19,imaging}                                  | 
+ ngs-sdk                       |     15 | {bio-dev}                                           | 
+ orthanc-webviewer             |     15 | {imaging}                                           | 
  insighttoolkit4               |     13 | {imaging-dev}                                       | 
- adun.app                      |     12 | {bio}                                               | 
+ invesalius                    |     13 | {imaging}                                           | 
  gnumed-server                 |     12 | {practice,covid-19}                                 | 
- invesalius                    |     12 | {imaging}                                           | 
- dicomnifti                    |      9 | {imaging}                                           | 
- minc-tools                    |      9 | {imaging}                                           | 
- nifticlib                     |      9 | {imaging}                                           | 
+ adun.app                      |     11 | {bio}                                               | 
+ minc-tools                    |     11 | {imaging}                                           | 
+ dicomnifti                    |     10 | {imaging}                                           | 
+ nifticlib                     |     10 | {imaging}                                           | 
+ pixelmed                      |     10 | {imaging}                                           | 
  gdcm                          |      8 | {imaging-dev}                                       | 
- pixelmed                      |      8 | {imaging}                                           | 
  ngs-sdk                       |      7 | {bio-dev}                                           | 
- openslide                     |      7 | {imaging-dev}                                       | 
  busco                         |      6 | {bio,covid-19}                                      | 
  libminc                       |      6 | {imaging-dev}                                       | 
  nifti2dicom                   |      6 | {imaging}                                           | 
+ openslide                     |      6 | {imaging-dev}                                       | 
  orthanc-dicomweb              |      6 | {covid-19,imaging}                                  | 
  salmid                        |      6 | {bio}                                               | 
- biojava-live                  |      5 | {bio-dev}                                           | 
  ea-utils                      |      5 | {bio}                                               | 
  jebl2                         |      5 | {bio-dev}                                           | 
  librg-utils-perl              |      5 | {bio}                                               | 
+ mia                           |      5 | {imaging}                                           | 
+ ngs-sdk                       |      5 | {bio-dev}                                           | 
  nifti2dicom                   |      5 | {imaging}                                           | 
  nifticlib                     |      5 | {imaging-dev}                                       | 
+ plastimatch                   |      5 | {imaging}                                           | 
  salmon                        |      5 | {covid-19,bio}                                      | 
+ sight                         |      5 | {imaging}                                           | 
+ biojava-live                  |      4 | {bio-dev}                                           | 
  dicompyler                    |      4 | {oncology}                                          | 
+ king                          |      4 | {typesetting,imaging}                               | 
+ libdivsufsort                 |      4 | {bio-dev}                                           | 
  melting                       |      4 | {cloud,bio}                                         | 
- mia                           |      4 | {imaging}                                           | 
- ngs-sdk                       |      4 | {bio-dev}                                           | 
+ nipype                        |      4 | {imaging-dev,imaging}                               | 
  orthanc-mysql                 |      4 | {imaging}                                           | 
  orthanc-postgresql            |      4 | {imaging}                                           | 
  oscar                         |      4 | {tools,data,practice}                               | 
  phast                         |      4 | {bio}                                               | 
- plastimatch                   |      4 | {imaging}                                           | 
  runcircos-gui                 |      4 | {bio}                                               | 
- sight                         |      4 | {imaging}                                           | 
  treeview                      |      4 | {bio,bio-phylogeny}                                 | 
  bart-view                     |      3 | {imaging}                                           | 
  beast-mcmc                    |      3 | {bio-phylogeny,bio}                                 | 
@@ -61,11 +64,8 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
  embassy-domalign              |      3 | {cloud,bio}                                         | 
  emboss-explorer               |      3 | {bio}                                               | 
  getdata                       |      3 | {bio}                                               | 
- king                          |      3 | {typesetting,imaging}                               | 
  lagan                         |      3 | {bio}                                               | 
- libdivsufsort                 |      3 | {bio-dev}                                           | 
  libsbml                       |      3 | {bio-dev}                                           | 
- nipype                        |      3 | {imaging-dev,imaging}                               | 
  obitools                      |      3 | {bio}                                               | 
  saint                         |      3 | {bio}                                               | 
  spread-phy                    |      3 | {bio,bio-phylogeny}                                 | 
@@ -88,7 +88,6 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
  lamarc                        |      2 | {bio}                                               | 
  libncl                        |      2 | {bio}                                               | 
  librdp-taxonomy-tree-java     |      2 | {bio-dev}                                           | 
- logol                         |      2 | {bio}                                               | 
  mhap                          |      2 | {bio,bio-ngs}                                       | 
  orthanc-gdcm                  |      2 | {imaging}                                           | 
  pbdagcon                      |      2 | {bio}                                               | 
@@ -118,6 +117,7 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
  libmuscle                     |      1 | {bio-dev}                                           | 
  libpal-java                   |      1 | {bio-dev}                                           | 
  libvistaio                    |      1 | {imaging-dev}                                       | 
+ logol                         |      1 | {bio}                                               | 
  mauve-aligner                 |      1 | {bio}                                               | 
  metaphlan2                    |      1 | {bio}                                               | 
  microbegps                    |      1 | {bio}                                               | 
@@ -129,6 +129,7 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
  plasmidseeker                 |      1 | {bio}                                               | 
  proalign                      |      1 | {bio,bio-phylogeny}                                 | 
  pscan-chip                    |      1 | {bio}                                               | 
+ python-wdlparse               |      1 | {bio-dev}                                           | 
  qcumber                       |      1 | {bio}                                               | 
  rambo-k                       |      1 | {bio}                                               | 
  rdp-alignment                 |      1 | {bio}                                               | 
@@ -213,7 +214,6 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
  python-bcbio-gff              |      0 | {bio-dev}                                           | 
  python-epimodels              |      0 | {epi}                                               | 
  python-seqcluster             |      0 | {bio-dev,covid-19}                                  | 
- python-wdlparse               |      0 | {bio-dev}                                           | 
  q2-sample-classifier          |      0 | {bio-dev,bio}                                       | 
  resfinder-db                  |      0 | {bio}                                               | 
  sbmltoolbox                   |      0 | {bio-dev}                                           | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/08a7b3016f032590941d84b08567bcf015490356

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/08a7b3016f032590941d84b08567bcf015490356
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