[med-svn] [Git][med-team/trinityrnaseq][master] 8 commits: adjust cmake invocation

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq


Commits:
9d5f0922 by Michael R. Crusoe at 2021-10-22T15:30:45+02:00
adjust cmake invocation

- - - - -
2e9416aa by Michael R. Crusoe at 2021-10-22T15:36:23+02:00
new patch: debian/patches/which_command_v to use 'command -v' instead of which

- - - - -
8ebf7f87 by Michael R. Crusoe at 2021-11-07T17:10:59+01:00
routine-update: New upstream version

- - - - -
505b894c by Michael R. Crusoe at 2021-11-07T17:11:05+01:00
New upstream version 2.13.2+dfsg
- - - - -
22908340 by Michael R. Crusoe at 2021-11-07T17:13:45+01:00
Update upstream source from tag 'upstream/2.13.2+dfsg'

Update to upstream version '2.13.2+dfsg'
with Debian dir 2745b018f7be12e55e2e8c9e85b3e29a91252865
- - - - -
983bf734 by Michael R. Crusoe at 2021-11-07T17:13:45+01:00
routine-update: Standards-Version: 4.6.0

- - - - -
7673daf7 by Michael R. Crusoe at 2021-11-08T00:36:15+01:00
Refresh patches

- - - - -
5179a51e by Michael R. Crusoe at 2021-11-08T00:36:16+01:00
routine-update: Ready to upload to unstable

- - - - -


30 changed files:

- Analysis/DifferentialExpression/prep_n_run_GOplot.pl → Analysis/DifferentialExpression/deprecated/prep_n_run_GOplot.pl
- Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl
- Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
- Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
- Analysis/SuperTranscripts/pylib/Node_alignment.py
- Analysis/SuperTranscripts/pylib/Trinity_fasta_parser.py
- Changelog.txt
- Chrysalis/CMakeLists.txt
- Chrysalis/analysis/QuantifyGraph.cc
- Chrysalis/analysis/ReadsToTranscripts.cc
- Chrysalis/analysis/sequenceUtil.cc
- Chrysalis/analysis/sequenceUtil.h
- Docker/Dockerfile
- Docker/VERSION.txt
- Docker/cleanMe.sh
- Docker/run_ext_test_docker.sh
- Docker/run_ext_test_singularity.sh
- Docker/run_test_docker.sh
- Trinity
- − bioconda_recipe/trinity/2.1.1/build.sh
- − bioconda_recipe/trinity/2.1.1/meta.yaml
- − bioconda_recipe/trinity/2.2.0/Build.PL
- − bioconda_recipe/trinity/2.2.0/build.sh
- − bioconda_recipe/trinity/2.2.0/makefile.clean.patch
- − bioconda_recipe/trinity/2.2.0/meta.yaml
- − bioconda_recipe/trinity/2.2.0/trinity-plugins.makefile.clean.patch
- − bioconda_recipe/trinity/2.3.2/Build.PL
- − bioconda_recipe/trinity/2.3.2/build.sh
- − bioconda_recipe/trinity/2.3.2/makefile.clean.patch
- − bioconda_recipe/trinity/2.3.2/meta.yaml


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/234c2bdeb9780ce7fdbc83f13ce782ce296f820e...5179a51e66583ac0501467f2cc53a489c7d98e57

-- 
View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/234c2bdeb9780ce7fdbc83f13ce782ce296f820e...5179a51e66583ac0501467f2cc53a489c7d98e57
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20211107/babd30bb/attachment.htm>