[med-svn] [Git][med-team/trinityrnaseq][upstream] New upstream version 2.13.2+dfsg

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch upstream at Debian Med / trinityrnaseq


Commits:
505b894c by Michael R. Crusoe at 2021-11-07T17:11:05+01:00
New upstream version 2.13.2+dfsg
- - - - -


30 changed files:

- Analysis/DifferentialExpression/prep_n_run_GOplot.pl → Analysis/DifferentialExpression/deprecated/prep_n_run_GOplot.pl
- Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl
- Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
- Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
- Analysis/SuperTranscripts/pylib/Node_alignment.py
- Analysis/SuperTranscripts/pylib/Trinity_fasta_parser.py
- Changelog.txt
- Chrysalis/CMakeLists.txt
- Chrysalis/analysis/QuantifyGraph.cc
- Chrysalis/analysis/ReadsToTranscripts.cc
- Chrysalis/analysis/sequenceUtil.cc
- Chrysalis/analysis/sequenceUtil.h
- Docker/Dockerfile
- Docker/VERSION.txt
- Docker/cleanMe.sh
- Docker/run_ext_test_docker.sh
- Docker/run_ext_test_singularity.sh
- Docker/run_test_docker.sh
- Trinity
- − bioconda_recipe/trinity/2.1.1/build.sh
- − bioconda_recipe/trinity/2.1.1/meta.yaml
- − bioconda_recipe/trinity/2.2.0/Build.PL
- − bioconda_recipe/trinity/2.2.0/build.sh
- − bioconda_recipe/trinity/2.2.0/makefile.clean.patch
- − bioconda_recipe/trinity/2.2.0/meta.yaml
- − bioconda_recipe/trinity/2.2.0/trinity-plugins.makefile.clean.patch
- − bioconda_recipe/trinity/2.3.2/Build.PL
- − bioconda_recipe/trinity/2.3.2/build.sh
- − bioconda_recipe/trinity/2.3.2/makefile.clean.patch
- − bioconda_recipe/trinity/2.3.2/meta.yaml


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/commit/505b894c81ad8553bb616073371c45dca9491856

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View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/commit/505b894c81ad8553bb616073371c45dca9491856
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