[med-svn] [Git][med-team/discosnp][master] 6 commits: New upstream version (upstream has not properly tagged what was released as...

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / discosnp


Commits:
662a6639 by Andreas Tille at 2021-11-09T17:40:40+01:00
New upstream version (upstream has not properly tagged what was released as version 4.4.4 thus using epoch)

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256f09c7 by Andreas Tille at 2021-11-09T18:24:07+01:00
debian/watch:
     - do not report broken version 4.4.4
     - create sensible download file name

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59edc4e4 by Andreas Tille at 2021-11-09T18:24:20+01:00
New upstream version 2.5.4
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b6da7951 by Andreas Tille at 2021-11-09T18:24:23+01:00
Update upstream source from tag 'upstream/2.5.4'

Update to upstream version '2.5.4'
with Debian dir 113d18c905e221ef2bb43b1d94b8a9b3b1990acd
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5e4c0dd5 by Andreas Tille at 2021-11-09T20:26:28+01:00
Refresh patches

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cd713984 by Andreas Tille at 2021-11-09T21:06:03+01:00
Close bug and upload to unstable

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23 changed files:

- CMakeLists.txt
- + RELEASE.md
- debian/changelog
- debian/patches/2to3.patch
- debian/patches/path_to_readme_file_names.patch
- debian/patches/spelling.patch
- debian/watch
- discoSnpRAD/README.md
- discoSnpRAD/run_discoSnpRad.sh
- run_discoSnp++.sh
- run_discoSnp++_ML.sh
- − run_discoSnp++_storagefile.sh
- scripts/VCF_creator.py
- scripts/k3000/K3000.py
- scripts/k3000/K3000_common.py
- − scripts/k3000/K3000_compacted_int_to_fa.py
- − scripts/k3000/K3000_compacted_paths_to_fa.py
- scripts/k3000/K3000_enhance_gfa.py
- + scripts/k3000/K3000_fact_haplotypes_to_localized_variant_ids.py
- + scripts/k3000/K3000_facts_to_fa.py
- + scripts/k3000/K3000_facts_to_gfa.py
- scripts/k3000/K3000_find_unitig_connected_pairs_of_facts.py
- scripts/k3000/K3000_gfa_post_treatment.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/discosnp/-/compare/cf1f6a2f8ce0879771b972270d2ef85b41583388...cd713984e270095aac4a20d7229ddab474929d60

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View it on GitLab: https://salsa.debian.org/med-team/discosnp/-/compare/cf1f6a2f8ce0879771b972270d2ef85b41583388...cd713984e270095aac4a20d7229ddab474929d60
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