[med-svn] [Git][med-team/snakemake][master] 2 commits: Get tests passing

[Nilesh Patra (@nilesh)]

Nilesh Patra pushed to branch master at Debian Med / snakemake


Commits:
3058f9c0 by Nilesh Patra at 2021-10-20T12:31:43+05:30
Get tests passing

- - - - -
252462db by Nilesh Patra at 2021-10-20T12:35:27+05:30
Interim changelog entry

- - - - -


3 changed files:

- debian/changelog
- debian/tests/control
- debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,17 @@
+snakemake (6.9.1+dfsg1-3) UNRELEASED; urgency=medium
+
+  * Team Upload.
+  * d/t/control:
+    + Comment another instance of snakemake-doc
+    + Add python3-requests-mock and python3-jinja2 to test deps
+  * d/t/run-unit-tests:
+    + Exclude couple of tests (similar as build time)
+  * d/copyright, d/rules, d/connection_pool.py:
+    + Hack around to install connection_pool.py as file, and use
+      the same
+
+ -- Nilesh Patra <nilesh at debian.org>  Wed, 20 Oct 2021 12:31:52 +0530
+
 snakemake (6.9.1+dfsg1-2) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/tests/control
=====================================
@@ -13,5 +13,6 @@ Depends: snakemake,
          python3-pandas,
          python3-pytest,
          python3-requests-mock,
+         python3-jinja2,
          stress
 Restrictions: allow-stderr


=====================================
debian/tests/run-unit-test
=====================================
@@ -21,4 +21,4 @@ export HOME="${AUTOPKGTEST_TMP}"
 . /etc/profile.d/modules.sh
 
 #See debian/rules for why these are excluded
-python3 -m pytest -v ${ROOT}/tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_ancient and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_github_issue1062 and not test_env_modules and not test_modules_meta_wrapper and not test_tes'
+python3 -m pytest -v ${ROOT}/tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_ancient and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_github_issue1062 and not test_env_modules and not test_modules_meta_wrapper and not test_tes and not test_metadata_migration'



View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/7b2f99ac2dcf4b862d3c43b727ee9de7c678c563...252462db81e6746ddc62cb15f9f22e5110a37778

-- 
View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/7b2f99ac2dcf4b862d3c43b727ee9de7c678c563...252462db81e6746ddc62cb15f9f22e5110a37778
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