[med-svn] [Git][med-team/bowtie][master] 12 commits: routine-update: Fix watchfile to detect new versions on github

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / bowtie


Commits:
da442a8f by Andreas Tille at 2021-09-14T06:47:47+02:00
routine-update: Fix watchfile to detect new versions on github

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6ca9ee4f by Andreas Tille at 2021-09-14T06:48:19+02:00
routine-update: New upstream version

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f1445fa7 by Andreas Tille at 2021-09-14T06:48:20+02:00
New upstream version 1.3.1+dfsg
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dd0be1cb by Andreas Tille at 2021-09-14T06:48:29+02:00
Update upstream source from tag 'upstream/1.3.1+dfsg'

Update to upstream version '1.3.1+dfsg'
with Debian dir 7cd83390d5ecb155b8ff04e1dc8d9412f658be08
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aa3500b3 by Andreas Tille at 2021-09-14T06:48:29+02:00
routine-update: Standards-Version: 4.6.0

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55064dbb by Andreas Tille at 2021-09-14T06:48:34+02:00
Update renamed lintian tag names in lintian overrides.

Changes-By: lintian-brush
Fixes: lintian: renamed-tag
See-also: https://lintian.debian.org/tags/renamed-tag.html

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0951a14c by Andreas Tille at 2021-09-14T06:48:37+02:00
Apply multi-arch hints.
+ bowtie-examples: Add Multi-Arch: foreign.

Changes-By: apply-multiarch-hints

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e6c4f704 by Andreas Tille at 2021-09-14T06:53:04+02:00
No need to exclude files from upstream tarball any more

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9bf01743 by Andreas Tille at 2021-09-14T06:53:39+02:00
New upstream version 1.3.1
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e6d20ace by Andreas Tille at 2021-09-14T06:54:08+02:00
Update upstream source from tag 'upstream/1.3.1'

Update to upstream version '1.3.1'
with Debian dir c15b94dde73abffb9fe3f4722fe3f6d17f276237
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9591bd07 by Andreas Tille at 2021-09-14T07:01:11+02:00
Refresh patches

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9292e6de by Andreas Tille at 2021-09-14T07:06:21+02:00
Upload to unstable

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30 changed files:

- + .github/workflows/random_tests.yml
- + .github/workflows/simple_tests.yml
- .travis.yml
- Makefile
- NEWS
- VERSION
- bowtie-inspect
- bt2_locks.cpp
- bt2_locks.h
- debian/bowtie.lintian-overrides
- debian/changelog
- debian/control
- debian/copyright
- debian/patches/popcnt_capability.patch
- debian/patches/reproducible.patch
- debian/patches/simple-test
- debian/patches/use-dpkg-buildflags.patch
- debian/watch
- doc/website/manual.ssi
- doc/website/recent_news.ssi
- doc/website/rhsidebar.ssi
- ebwt.h
- ebwt_search_util.h
- + genomes/.cvsignore
- hit.h
- + mem_ids.h
- multikey_qsort.h
- scripts/bowtie-hbb.sh
- shmem.h
- threading.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bowtie/-/compare/344c83aabf06f30804d26ffdb9492fd11756946e...9292e6dea5dbde1fda5f427bfe9dbc5a642a10bf

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View it on GitLab: https://salsa.debian.org/med-team/bowtie/-/compare/344c83aabf06f30804d26ffdb9492fd11756946e...9292e6dea5dbde1fda5f427bfe9dbc5a642a10bf
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