[med-svn] [Git][med-team/sepp][master] 15 commits: New upstream version 4.5.1+dfsg

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / sepp


Commits:
3eb99db2 by Pierre Gruet at 2021-09-24T18:01:33+02:00
New upstream version 4.5.1+dfsg
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4d914a8d by Pierre Gruet at 2021-09-24T18:02:04+02:00
Update upstream source from tag 'upstream/4.5.1+dfsg'

Update to upstream version '4.5.1+dfsg'
with Debian dir 2e0d3987acddd7904cf2c8dc956a7a3485071ebb
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3a53504f by Pierre Gruet at 2021-09-24T18:10:51+02:00
Using my debian.org email address

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18481475 by Pierre Gruet at 2021-09-25T21:39:27+02:00
tipp is now shipped in a different source package

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f951b943 by Pierre Gruet at 2021-09-25T21:44:47+02:00
Refreshing patches, deleting 3 upstreamed ones

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a65f8456 by Pierre Gruet at 2021-09-26T21:26:37+02:00
Setting Standards version to 4.6.0 (no change)

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a661041e by Pierre Gruet at 2021-09-26T21:30:05+02:00
Syntax error corrected in d/rules

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2a9d4b7e by Pierre Gruet at 2021-09-26T21:30:29+02:00
Using the Debian path of hmmbuild in the test testUPP

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6d52a192 by Pierre Gruet at 2021-09-27T15:22:23+02:00
Solving the conflict with commit abacb57e

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39f3c816 by Pierre Gruet at 2021-09-27T15:53:19+02:00
Putting again dh_auto_configure in its own override

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6a53c852 by Pierre Gruet at 2021-09-27T16:08:04+02:00
Refreshing manpages of run-sepp.py and run_sepp.py

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8a2491a3 by Pierre Gruet at 2021-09-27T16:15:06+02:00
Adding d/sepp.maintscript to remove /etc/sepp/tipp/config, gone in tipp source package

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f7be5472 by Pierre Gruet at 2021-09-27T16:17:46+02:00
Dropping unneeded dependencies

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2fa2962c by Pierre Gruet at 2021-09-27T17:28:26+02:00
Providing a NEWS file to inform users that tipp now has its own package

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141f87ee by Pierre Gruet at 2021-09-27T17:37:36+02:00
Updating changelog

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30 changed files:

- + .coveragerc
- .travis.yml
- CHANGELOG.md
- README.SEPP.md
- − README.TIPP.md
- README.UPP.md
- README.md
- debian/README.Debian
- debian/README.source
- debian/changelog
- debian/control
- debian/copyright
- debian/docs
- debian/man/run-sepp.sh.1
- − debian/man/run_abundance.py.1
- debian/man/run_sepp.py.1
- − debian/man/run_tipp.py.1
- − debian/man/run_tipp_tool.py.1
- − debian/man/tipp.config.5
- debian/patches/change_java_version_for_ant.patch
- debian/patches/configuration_files_in_etc_and_per_user.patch
- debian/patches/deactivating_log_test.patch
- + debian/patches/hmmbuild_path_for_testUPP.patch
- debian/patches/java_build.patch
- − debian/patches/json_collections.patch
- − debian/patches/looking_for_integer_in_placements.patch
- − debian/patches/make_split_sequences_script.patch
- debian/patches/series
- debian/patches/setup.patch
- debian/patches/use_debian_packaged_guppy_from_pplacer.patch


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/sepp/-/compare/abacb57ee10f54107ee790e8fa2bcf00ed68e8d2...141f87ee53a14a19c7d376a03e81ea47377d2cc6

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View it on GitLab: https://salsa.debian.org/med-team/sepp/-/compare/abacb57ee10f54107ee790e8fa2bcf00ed68e8d2...141f87ee53a14a19c7d376a03e81ea47377d2cc6
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