[med-svn] [Git][med-team/toil][upstream] New upstream version 5.5.0

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch upstream at Debian Med / toil


Commits:
033eb525 by Michael R. Crusoe at 2021-09-29T17:31:02+02:00
New upstream version 5.5.0
- - - - -


30 changed files:

- .github/PULL_REQUEST_TEMPLATE.md
- .gitignore
- .gitlab-ci.yml
- − .travis.yml
- contrib/admin/mypy-with-ignore.py
- + contrib/admin/wheel-of-issues
- + contrib/typeshed/dill/__init__.pyi
- + contrib/typeshed/dill/_dill.pyi
- docs/appendices/environment_vars.rst
- docs/developingWorkflows/developing.rst
- docs/running/cliOptions.rst
- docs/running/cloud/clusterUtils.rst
- docs/running/cwl.rst
- requirements-dev.txt
- setup.py
- src/toil/batchSystems/abstractBatchSystem.py
- src/toil/batchSystems/abstractGridEngineBatchSystem.py
- src/toil/batchSystems/gridengine.py
- src/toil/batchSystems/htcondor.py
- src/toil/batchSystems/kubernetes.py
- src/toil/batchSystems/lsf.py
- src/toil/batchSystems/lsfHelper.py
- src/toil/batchSystems/mesos/batchSystem.py
- src/toil/batchSystems/options.py
- src/toil/batchSystems/parasol.py
- src/toil/batchSystems/registry.py
- src/toil/batchSystems/singleMachine.py
- src/toil/batchSystems/slurm.py
- src/toil/batchSystems/torque.py
- + src/toil/bus.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/commit/033eb5257f0fb2759ac2567d5922617d53e804a3

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