[med-svn] [Git][med-team/augur][master] 6 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / augur


Commits:
a2c4e2fa by Andreas Tille at 2022-12-20T17:39:29+01:00
routine-update: New upstream version

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787886cf by Andreas Tille at 2022-12-20T17:39:30+01:00
New upstream version 19.2.0
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6c429f79 by Andreas Tille at 2022-12-20T17:40:17+01:00
Update upstream source from tag 'upstream/19.2.0'

Update to upstream version '19.2.0'
with Debian dir 2d439e4971fff5eaa8cb572ca2882de74e0d7a28
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a8b0e41a by Andreas Tille at 2022-12-20T17:40:17+01:00
routine-update: Standards-Version: 4.6.2

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3baf064c by Andreas Tille at 2022-12-20T17:44:46+01:00
Build-Depends: python3-pyfastx

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d5a54708 by Andreas Tille at 2022-12-20T17:50:56+01:00
(Build-)Depends: python3-zstandard

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30 changed files:

- + .github/workflows/sync-redirects.yaml
- CHANGES.md
- augur/__init__.py
- augur/__version__.py
- augur/align.py
- augur/export_v1.py
- augur/export_v2.py
- augur/filter.py
- augur/frequencies.py
- augur/index.py
- augur/io/__init__.py
- augur/io/metadata.py
- augur/mask.py
- augur/parse.py
- augur/refine.py
- augur/titer_model.py
- augur/titers.py
- augur/traits.py
- augur/translate.py
- augur/tree.py
- augur/utils.py
- debian/changelog
- debian/control
- docs/Makefile
- − docs/api/api.rst
- docs/api/augur.align.rst → docs/api/developer/augur.align.rst
- docs/api/augur.ancestral.rst → docs/api/developer/augur.ancestral.rst
- docs/api/augur.clades.rst → docs/api/developer/augur.clades.rst
- docs/api/augur.io.rst → docs/api/developer/augur.dates.rst
- docs/api/augur.distance.rst → docs/api/developer/augur.distance.rst


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/augur/-/compare/158948989f8079bc65d414d2cad8b06938593a5c...d5a54708fbdc1e825d920f9aa3fa75f4783eb2c6

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View it on GitLab: https://salsa.debian.org/med-team/augur/-/compare/158948989f8079bc65d414d2cad8b06938593a5c...d5a54708fbdc1e825d920f9aa3fa75f4783eb2c6
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