[med-svn] [Git][med-team/gubbins][master] 6 commits: New upstream version 2.4.1

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / gubbins


Commits:
969b2215 by Andreas Tille at 2022-02-13T15:12:07+01:00
New upstream version 2.4.1
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fbfb65bd by Andreas Tille at 2022-02-13T15:12:07+01:00
New upstream version 2.4.1
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8b19f5db by Andreas Tille at 2022-02-13T15:13:21+01:00
Revert to old gubbins release to fix bug with iqtree2 compatibility

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7de08d10 by Andreas Tille at 2022-02-13T15:15:15+01:00
Adapt to iqtree2

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0a7fff80 by Andreas Tille at 2022-02-13T15:17:19+01:00
Adapt port-to-pytest to old upstream version

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b67b2ee4 by Andreas Tille at 2022-02-13T15:20:39+01:00
Upload to unstable

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29 changed files:

- − .github/workflows/build.yml
- + .travis.yml
- CHANGELOG.md
- Dockerfile
- README.md
- VERSION
- configure.ac
- debian/changelog
- + debian/patches/gubbins_3.1.0_exe_in_usr_lib.patch
- debian/patches/gubbins_exe_in_usr_lib.patch
- + debian/patches/iqtree2.patch
- debian/patches/port-to-pytest.patch
- debian/patches/series
- + debian/patches/spelling-error-in-binary.patch
- − environment.yml
- install_dependencies.sh
- + obsolete_changelog
- python/Makefile.am
- − python/VERSION
- python/gubbins/ValidateFastaAlignment.py
- python/gubbins/__init__.py
- python/gubbins/common.py
- − python/gubbins/pyjar.py
- − python/gubbins/run_gubbins.py
- − python/gubbins/tests/data/bootstrapping_test.aln
- python/gubbins/tests/data/non_bi_tree.tre.expected
- python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_expected → python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4
- python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_2_expected → python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_2
- python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_tree_at_midpoint_expected


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/gubbins/-/compare/47586c783ae4f2d13930b857f9ad7d009ef9c76b...b67b2ee4557630cd4a0557a5caebf74a2d37f59c

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View it on GitLab: https://salsa.debian.org/med-team/gubbins/-/compare/47586c783ae4f2d13930b857f9ad7d009ef9c76b...b67b2ee4557630cd4a0557a5caebf74a2d37f59c
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