[med-svn] [Git][med-team/ncbi-vdb][master] 7 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / ncbi-vdb


Commits:
25e5500a by Andreas Tille at 2022-02-19T11:53:03+01:00
routine-update: New upstream version

- - - - -
2d5c2d9f by Andreas Tille at 2022-02-19T11:53:05+01:00
New upstream version 3.0.0+dfsg
- - - - -
ec1467e0 by Andreas Tille at 2022-02-19T11:53:26+01:00
Update upstream source from tag 'upstream/3.0.0+dfsg'

Update to upstream version '3.0.0+dfsg'
with Debian dir f47f7373b4aac89f985c249ba9a05e5067449bde
- - - - -
2a57087c by Andreas Tille at 2022-02-19T11:58:13+01:00
Drop deactivated patch

- - - - -
86d5e111 by Andreas Tille at 2022-02-19T11:59:00+01:00
Deactivate all patches regarding old upstream build system

- - - - -
2beb120b by Andreas Tille at 2022-02-19T14:13:48+01:00
Switch to cmake build system

- - - - -
933aaa8e by Andreas Tille at 2022-02-19T14:15:13+01:00
Revert unintended changes to upstream source

- - - - -


30 changed files:

- + .gitattributes
- .gitignore
- CHANGES.md
- test/ngs-java/Makefile → CMakeLists.txt
- Makefile
- README.md
- build/Makefile.env
- − build/Makefile.shell
- build/Makefile.vers
- + build/common.cmake
- + build/env.cmake
- + build/install-root.sh
- + build/lift.sh
- configure
- debian/changelog
- debian/control
- − debian/patches/debug_configure.patch
- − debian/patches/fix_2.10.9_refseq_race.patch
- + debian/patches/fix_cmake.patch
- debian/patches/series
- debian/patches/zstd.patch
- debian/rules
- interfaces/align/align.vschema
- interfaces/align/samextract-lib.h
- + interfaces/align/samextract-pool-priv.h
- libs/ngs/BAM_Record.h → interfaces/align/samextract-priv.h
- libs/ngs/extern.h → interfaces/cc/clang/compiler.h
- + interfaces/cc/clang/noarch/bitstr.h
- libs/ngs/CSRA1_PileupEvent.h → interfaces/cc/clang/va_copy.h
- + interfaces/cc/clang/x86_64/arch-impl.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ncbi-vdb/-/compare/6566a48576b6eafaf1cbd15c6b3b36363a066c50...933aaa8edb507bd22d98d6010b9230307de6a57a

-- 
View it on GitLab: https://salsa.debian.org/med-team/ncbi-vdb/-/compare/6566a48576b6eafaf1cbd15c6b3b36363a066c50...933aaa8edb507bd22d98d6010b9230307de6a57a
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20220219/bfeaa5e1/attachment.htm>