[med-svn] [Git][med-team/snpeff][master] 4 commits: snpeff must depend on default-jre

[Pierre Gruet (@pgt)]

Pierre Gruet pushed to branch master at Debian Med / snpeff


Commits:
7f69c163 by Pierre Gruet at 2021-04-17T23:03:08+02:00
snpeff must depend on default-jre

- - - - -
56143cff by Pierre Gruet at 2022-01-22T14:44:17+01:00
Adding Apache-2.0 licence in d/copyright

- - - - -
38c74dfb by Pierre Gruet at 2022-01-22T14:58:08+01:00
Setting Standards version to 4.6.0 (no change)

- - - - -
75f48e58 by Pierre Gruet at 2022-01-22T15:48:15+01:00
Upload to NEW, targetting experimental

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/copyright


Changes:

=====================================
debian/changelog
=====================================
@@ -2,4 +2,4 @@ snpeff (4.3t+dfsg1-1) experimental; urgency=medium
 
   * Initial release (Closes: #986141)
 
- -- Pierre Gruet <pgt at debian.org>  Wed, 31 Mar 2021 15:59:41 +0200
+ -- Pierre Gruet <pgt at debian.org>  Sat, 22 Jan 2022 14:41:57 +0100


=====================================
debian/control
=====================================
@@ -34,7 +34,7 @@ Build-Depends: debhelper-compat (= 13),
                libapfloat-java,
                libdistlib-java,
                scala-library
-Standards-Version: 4.5.1
+Standards-Version: 4.6.0
 Vcs-Browser: https://salsa.debian.org/med-team/snpeff
 Vcs-Git: https://salsa.debian.org/med-team/snpeff.git
 Homepage: https://pcingola.github.io/SnpEff/
@@ -63,7 +63,8 @@ Description: genetic variant annotation and effect prediction toolbox - lib
 
 Package: snpeff
 Architecture: all
-Depends: ${java:Depends},
+Depends: default-jre,
+         ${java:Depends},
          ${misc:Depends},
          libsnpeff-java (= ${binary:Version})
 Suggests: vcfanno


=====================================
debian/copyright
=====================================
@@ -37,6 +37,12 @@ Files: src/main/java/org/broad/tribble/*
 Copyright: 2007-2009 The Broad Institute, Inc. and the Massachusetts Institute of Technology
 License: LGPL-2.1
 
+Files: src/main/java/org/snpeff/collections/ArrayUtil.java
+       src/main/java/org/snpeff/collections/BitUtil.java
+       src/main/java/org/snpeff/collections/OpenBitSet.java
+Copyright: Apache Software Foundation
+License: Apache-2.0
+
 Files: debian/*
 Copyright: 2012      Andreas Tille <tille at debian.org>
            2020-2021 Pierre Gruet <pgt at debian.org>
@@ -69,3 +75,7 @@ License: Expat
 License: LGPL-2.1
  On Debian systems the full text of the LGPL-3 can be found in
  /usr/share/common-licenses/LGPL-2.1
+
+License: Apache-2.0
+ On Debian systems, the full text of the Apache-2.0 license
+ can be found in the file '/usr/share/common-licenses/Apache-2.0'.



View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/61164097a144be45156447fc163106b4e4525d5a...75f48e58575634541412eb9a2db34497517bfad4

-- 
View it on GitLab: https://salsa.debian.org/med-team/snpeff/-/compare/61164097a144be45156447fc163106b4e4525d5a...75f48e58575634541412eb9a2db34497517bfad4
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20220122/812491db/attachment-0001.htm>