[med-svn] [Git][med-team/bbmap][master] 5 commits: New upstream version 39.06+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / bbmap


Commits:
d5699b50 by Étienne Mollier at 2023-11-24T11:45:48+01:00
New upstream version 39.06+dfsg
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edc5df71 by Étienne Mollier at 2023-11-24T11:45:57+01:00
Update upstream source from tag 'upstream/39.06+dfsg'

Update to upstream version '39.06+dfsg'
with Debian dir 70e9596f36dab942ba0469d3cfebfd787736eb96
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28a81ccb by Étienne Mollier at 2023-11-24T11:47:05+01:00
java_syntax.patch: delete: applied upstream.

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754b4366 by Étienne Mollier at 2023-11-24T11:47:46+01:00
32bit.patch: refresh.

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ab9a6e0a by Étienne Mollier at 2023-11-24T11:55:39+01:00
ready to upload to unstable.

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30 changed files:

- README.md
- bbcrisprfinder.sh
- bbduk.sh
- bbmerge.sh
- calcmem.sh
- clumpify.sh
- current/align2/RandomReads3.java
- current/barcode/BarcodeStats.java
- current/barcode/CorrelateBarcodes.java
- current/cardinality/CardinalityTracker.java
- current/cluster/ReadTag.java
- current/consensus/BaseNode.java
- current/covid/SummarizeCoverage.java
- current/dna/AminoAcid.java
- current/fileIO/ByteFile1.java
- current/fileIO/ReadWrite.java
- − current/fun/Crunch
- current/gff/CutGff.java
- current/jgi/CountBarcodes2.java → current/gff/ParseCrispr.java
- current/hiseq/CycleTracker.java
- current/icecream/IceCreamFinder.java
- current/icecream/ReformatPacBio.java
- current/jgi/AssemblyStats2.java
- current/jgi/BBDuk.java
- current/jgi/BBDuk2.java
- current/jgi/BBMask.java
- current/jgi/BBMerge.java
- current/jgi/CallPeaks.java
- current/jgi/CheckStrand2.java
- − current/jgi/CorrelateBarcodes.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/1b61c58e6d914cfc5d8a7b7a50bd59c172b680b4...ab9a6e0a4b90f0e5449187b41e44206a3cc74897

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View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/1b61c58e6d914cfc5d8a7b7a50bd59c172b680b4...ab9a6e0a4b90f0e5449187b41e44206a3cc74897
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