[Blends-commit] r1919 - projects/med/trunk/debian-med/tasks

[Debian Pure Blends Subversion Commit]

Author: plessy
Date: Thu Oct  8 10:33:48 2009
New Revision: 1919
URL: http://svn.debian.org/viewsvn/blends?rev=1919&view=rev

Log:
Added bwa to the sequence alignment programs of Debian Med’s bio task.


Modified:
   projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=1919&view=diff&r1=1919&r2=1918&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Thu Oct  8 10:33:48 2009
@@ -25,6 +25,13 @@
 
 Depends:     amap-align, boxshade, gff2aplot, muscle, sim4, sibsim4, wise
 
+Depends: bwa
+Published-Title: Fast and accurate short read alignment with Burrows-Wheeler transform
+Published-Authors: Li, Heng and Durbin, Richard
+Published-In: Bioinformatics 25(14):1754-1760
+Published-Year: 2009
+Published-URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/14/1754
+
 Depends: mummer
 Published-Title: Versatile and open software for comparing large genomes
 Published-Authors: Stefan Kurtz, Adam Phillippy, Arthur L. Delcher, Michael Smoot, Martin Shumway, Corina Antonescu, Steven L. Salzberg