[Blends-commit] r2293 - projects/med/trunk/debian-med/tasks

Thu Jul 29 14:16:01 UTC 2010

Author: tille
Date: Thu Jul 29 14:15:56 2010
New Revision: 2293
URL: http://svn.debian.org/viewsvn/blends?rev=2293&view=rev

Log:
Removed extra information of now official packages


Modified:
   projects/med/trunk/debian-med/tasks/bio
   projects/med/trunk/debian-med/tasks/bio-dev

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2293&view=diff&r1=2293&r2=2292&p1=projects/med/trunk/debian-med/tasks/bio&p2=projects/med/trunk/debian-med/tasks/bio
==============================================================================

--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Thu Jul 29 14:15:56 2010
@@ -344,6 +344,10 @@
 
 Depends: picard-tools
 
+Depends: acedb-other-dotter, acedb-other-belvu, acedb-other
+
+Depends: python-cogent
+
 Depends: r-other-genabel
 Homepage: http://mga.bionet.nsc.ru/nlru/GenABEL/
 Responsible: Steffen Moeller <steffen_moeller at gmx.de>
@@ -628,10 +632,11 @@
 
 Depends: jmol
 Homepage: http://jmol.sourceforge.net/
-Responsible: Vincent Fourmond <fourmond at debian.org>
+Responsible: Michael Banck <mbanck at debian.org>
+X-Old-Responsible: Vincent Fourmond <fourmond at debian.org>
 License: LGPL
 WNPP: 512930
-Vcs-Svn: svn://svn.debian.org/svn/pkg-escience/jmol/trunk/debian/
+Vcs-Svn: svn://svn.debian.org/svn/debichem/unstable/jmol/
 Pkg-Description: viewer for chemical structures in 3D
  Jmol is a Java molecular viewer for three-dimensional chemical structures.
  Features include reading a variety of file types and output from quantum
@@ -1856,33 +1861,6 @@
  http://www.sanger.ac.uk/Software/ACT/Examples/
 Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
 
-Depends: acedb-other-dotter, acedb-other-belvu
-
-Depends: acedb-other
-Homepage: http://www.acedb.org/
-License: GPL / LGPL
-Language: C, C++
-WNPP: 542068
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/acedb/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/acedb/trunk/
-Responsible: Steffen Moeller <moeller at debian.org>
-Pkg-Description: tools designed to manipulate genomic data
- AceDB is a genome database system developed since 1989 primarily by
- Jean Thierry-Mieg (CNRS, Montpellier) and Richard Durbin (Sanger
- Institute). It provides a custom database kernel, with a non-standard
- data model designed specifically for handling scientific data
- flexibly, and a graphical user interface with many specific displays
- and tools for genomic data. AceDB is used both for managing data
- within genome projects, and for making genomic data available to the
- wider scientific community.
- .
- AceDB was originally developed for the C.elegans genome project ,
- from which its name was derived (A C. elegans DataBase). However, the
- tools in it have been generalized to be much more flexible and the
- same software is now used for many different genomic databases from
- bacteria to fungi to plants to man. It is also increasingly used for
- databases with non-biological content.
-
 Comment: If you stumble upon alfresco at
  http://www.sanger.ac.uk/Software/Alfresco/ - it seems outdated and
  tarball vanished from the downlowad page.  So this is not for us even
@@ -3259,23 +3237,6 @@
 Published-Year: 2010
 Published-DOI: 10.1093/bioinformatics/btp636
 
-Depends: python-cogent
-WNPP: 587161
-Homepage: http://pycogent.sourceforge.net/
-License: GPL
-Language: Python
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-cogent/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/python-cogent/trunk/
-Responsible: Steffen Moeller <steffen_moeller at gmx.de>
-Pkg-Description: framework for genomic biology
- PyCogent is a software library for genomic biology. It is a fully
- integrated and thoroughly tested framework for: controlling third-party
- applications; devising workflows; querying databases; conducting novel
- probabilistic analyses of biological sequence evolution; and generating
- publication quality graphics. It is distinguished by many unique built-in
- capabilities (such as true codon alignment) and the frequent addition
- of entirely new methods for the analysis of genomic data.
-
 Depends: denoiser
 WNPP: 587274
 Homepage:  http://www.microbio.me/denoiser/

Modified: projects/med/trunk/debian-med/tasks/bio-dev
URL: http://svn.debian.org/viewsvn/blends/projects/med/trunk/debian-med/tasks/bio-dev?rev=2293&view=diff&r1=2293&r2=2292&p1=projects/med/trunk/debian-med/tasks/bio-dev&p2=projects/med/trunk/debian-med/tasks/bio-dev
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev	(original)
+++ projects/med/trunk/debian-med/tasks/bio-dev	Thu Jul 29 14:15:56 2010
@@ -76,6 +76,8 @@
 
 Depends: libbio-mage-utils-perl
 
+Depends: libace-perl
+
 Depends: bioconductor
 Homepage: http://www.bioconductor.org/
 Responsible: Debian CRAN/BioConductor/Omegahat packaging team <pkg-bioc-devel at lists.alioth.debian.org>

