[Blends-commit] r2798 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Fri Apr 29 08:50:32 2011
New Revision: 2798

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2798
Log:
Joined two ncbi-blast-plus entries (with different names)

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2798&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Apr 29 08:50:32 2011
@@ -3075,15 +3075,22 @@
 Published-URL: http://www.nature.com/nbt/journal/v28/n5/full/nbt.1621.html
 Published-Year: 2010
 
-Depends: ncbi-tools++
+Depends: ncbi-blast-plus
+License: BSD
 Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/
-License: Public domain except for some third-party LGPLed code
-Language: C++
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/ncbi-blast-plus/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/ncbi-blast-plus/?rev=0
 WNPP: 150636
-Pkg-Description: NCBI C++ libraries for biology applications
- The NCBI C++ Toolkit was developed for the production and distribution
- of new molecular-biology-related services by NCBI.  It allows you to
- read and write NCBI ASN.1 files, builds Cn3D, etc.
+Pkg-Description: NCBI Blast+ is new blast evolution
+ The Basic Local Alignment Search Tool (BLAST) is the most widely
+  used sequence similarity tool. There are versions of BLAST that
+ compare protein queries to protein databases, nucleotide queries
+ to nucleotide databases, as well as versions that translate nucleotide
+ queries or databases in all six frames and compare to protein databases or queries.
+ PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting
+ with a protein query, and then uses that PSSM to perform further searches.
+ It is also possible to compare a protein or nucleotide query to a database of PSSM’s.
+ The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service.
 
 Depends: treetime
 Homepage: http://treetime.linhi.com/
@@ -3732,21 +3739,6 @@
  A family of gene prediction programs developed at Georgia Institute of 
  Technology, Atlanta, Georgia, USA.
 
-Depends: ncbi-blast-plus
-License: BSD
-Homepage: http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/ncbi-blast-plus/trunk/
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/ncbi-blast-plus/?rev=0
-Pkg-Description: NCBI Blast+ is new blast evolution
- The Basic Local Alignment Search Tool (BLAST) is the most widely
-  used sequence similarity tool. There are versions of BLAST that
- compare protein queries to protein databases, nucleotide queries
- to nucleotide databases, as well as versions that translate nucleotide
- queries or databases in all six frames and compare to protein databases or queries.
- PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting
- with a protein query, and then uses that PSSM to perform further searches.
- It is also possible to compare a protein or nucleotide query to a database of PSSM’s.
- The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service.
 
 
 Comment: Several related R packages are listed at CRAN: