[Blends-commit] r2797 - in /projects/med/trunk/debian-med/tasks: bio-ngs imaging

[tille at users.alioth.debian.org]

Author: tille
Date: Fri Apr 29 07:51:29 2011
New Revision: 2797

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2797
Log:
Mothur in ngs, gofigure2 now official package

Modified:
    projects/med/trunk/debian-med/tasks/bio-ngs
    projects/med/trunk/debian-med/tasks/imaging

Modified: projects/med/trunk/debian-med/tasks/bio-ngs
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-ngs?rev=2797&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-ngs (original)
+++ projects/med/trunk/debian-med/tasks/bio-ngs Fri Apr 29 07:51:29 2011
@@ -18,6 +18,8 @@
 	ssake,
 	tabix,
 	velvet
+
+Depends: mothur
 
 Depends: qiime
 
@@ -90,22 +92,6 @@
  results in the BLAT axt, the BAM/SAM, the UCSC Genome Browser bed, or
  the Illumina ELAND formats.
 
-Depends: mothur
-Homepage: http://www.mothur.org
-License: not specified, contacted upstream
-WNPP: 589675
-Responsible: Sri Girish Srinivasa Murthy <srigirish at evolbio.mpg.de>
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mothur/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mothur/trunk/
-Pkg-Description: sequence analysis for research on microbiota
- Mothur seeks to develop a single piece of open-source, expandable
- software to fill the bioinformatics needs of the microbial ecology
- community. It has incorporated the functionality of dotur, sons,
- treeclimber, s-libshuff, unifrac, and much more. In addition to improving
- the flexibility of these algorithms, a number of other features including
- calculators and visualization tools were added.
-Remark: Packaging in SVN is finished, waiting for statement of authors about
- license.
 
 Depends: forge
 Homepage: http://combiol.org/forge/

Modified: projects/med/trunk/debian-med/tasks/imaging
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/imaging?rev=2797&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging (original)
+++ projects/med/trunk/debian-med/tasks/imaging Fri Apr 29 07:51:29 2011
@@ -109,6 +109,8 @@
 Depends: pixelmed-java
 
 Depends: vmtk
+
+Depends: gofigure2
 
 Depends: bioimagesuite
 Homepage: http://www.bioimagesuite.org/
@@ -782,21 +784,6 @@
 Published-Year: 1998
 Remark: This package is waiting for the Debian data package archive to become available.
 
-Depends: gofigure2
-Homepage: http://gofigure2.sf.net
-License: BSD
-Language: C++
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/gofigure2/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/gofigure2/trunk/
-WNPP: 587051
-Responsible: Mathieu Malaterre <mathieu.malaterre at gmail.com>
-Pkg-Description: Cross-platform for visualizing, processing and analysing of bioimages
- GoFigure2 is an open-source, cross-platform application for
- visualizing, processing and analyzing of multidimensional microscopy
- data. Users can visualize, segment and track cells through time,
- detect cell-division and ultimately generate lineages.
-
-
 Depends: mipav
 Homepage: http://mipav.cit.nih.gov/
 License: custom, non-free, closed-source (DFSG-compliant version promised)