[Blends-commit] r2715 - in /projects/med/trunk/debian-med/tasks: bio bio-ngs

[plessy at users.alioth.debian.org]

Author: plessy
Date: Fri Mar 18 03:52:46 2011
New Revision: 2715

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2715
Log:
Tabix accepted in Debian.

Modified:
    projects/med/trunk/debian-med/tasks/bio
    projects/med/trunk/debian-med/tasks/bio-ngs

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2715&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Mar 18 03:52:46 2011
@@ -47,7 +47,7 @@
  old unmaintained version remained at code.google.com.  Please drop the
  maintainer a note if you have any news of this project.
 
-Depends:     boxshade, gff2aplot, muscle, sim4, sibsim4, wise
+Depends:     boxshade, gff2aplot, muscle, sim4, sibsim4, tabix, wise
 
 Depends: bwa
 Published-Title: Fast and accurate short read alignment with Burrows-Wheeler transform
@@ -3314,22 +3314,6 @@
 Published-Authors: Mikita Suyama, David Torrents, and Peer Bork
 Published-In: Nucleic Acids Res. 34:W609-W612
 Published-Year: 2006
-
-Depends: tabix
-WNPP: 606446
-Homepage: http://samtools.sourceforge.net/tabix.shtml
-License: MIT/X
-Language: C, plus some Java, python and Perl bindings
-Vcs-Git: git://git.debian.org/debian-med/tabix.git
-Vcs-Browser: http://git.debian.org/?p=debian-med/tabix.git;a=summary
-Responsible: Charles Plessy <plessy at debian.org>
-Pkg-Description: generic indexer for TAB-delimited genome position files
- Tabix indexes files where some columns indicate sequence coordinates: name
- (usually a chromosme), start and stop. The input data file must be position
- sorted and compressed by bgzip (provided in this package), which has a gzip
- like interface. After indexing, tabix is able to quickly retrieve data lines by
- chromosomal coordinates. Fast data retrieval also works over network if an URI
- is given as a file name.
 
 Depends: biomaj
 Homepage: http://biomaj.genouest.org

Modified: projects/med/trunk/debian-med/tasks/bio-ngs
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-ngs?rev=2715&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-ngs (original)
+++ projects/med/trunk/debian-med/tasks/bio-ngs Fri Mar 18 03:52:46 2011
@@ -11,6 +11,7 @@
 	r-bioc-hilbertvis,
 	samtools,
 	ssake,
+	tabix,
 	velvet
 
 Depends: bowtie