[Blends-commit] r2716 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Fri Mar 18 07:32:36 2011
New Revision: 2716

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=2716
Log:
Added metarep

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=2716&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Mar 18 07:32:36 2011
@@ -3658,7 +3658,7 @@
 Homepage: ftp://ftp.pasteur.fr/pub/gensoft/projects/squizz/
 Responsible: Olivier Sallou <olivier.sallou at irisa.fr>
 WNPP: 618689
-Description: sequence/alignment format checker
+Pkg-Description: sequence/alignment format checker
  Squizz is a sequence/alignment format checker, but it has some
  conversion capabilities too.
  .
@@ -3667,6 +3667,22 @@
     SWISSPROT.
   - CLUSTAL, FASTA, MEGA, MSF, NEXUS, PHYLIP (interleaved and sequential) and
     STOCKHOLM.
+
+Depends: metarep
+License: MIT
+Homepage: http://www.jcvi.org/metarep/
+Pkg-Description: JCVI Metagenomics Reports
+ JCVI Metagenomics Reports (METAREP) is a new open source tool for
+ high-performance comparative metagenomics. It provides a suite of web
+ based tools to help scientists to view, query, browse and compare
+ metagenomics annotation data derived from ORFs called on metagenomics
+ reads.
+ .
+ METAREP supports browsing of functional and taxonomic assignments.
+ Users can either specify fields, or logical combinations of fields to
+ flexibly filter datasets on the fly. Users can compare multiple datasets
+ at various functional and taxonomic levels applying statistical tests as
+ well as hierarchical clustering, multidimensional scaling and heatmaps. 
 
 
 Comment: Several related R packages are listed at CRAN: