[Blends-commit] r3511 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Wed Jul 18 12:47:11 2012
New Revision: 3511

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3511
Log:
Exclude reputer from our todo list because it is non-distributable according to http://lists.debian.org/debian-med/2012/07/msg00195.html; also exclude repeatfinder which depends from reputer

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3511&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Wed Jul 18 12:47:11 2012
@@ -1074,10 +1074,10 @@
  http://www.cbcb.umd.edu/software/SeeEse/index.html .
 Note: Other sequence analysis tools (http://www.cbcb.umd.edu/software/)
 
-Depends: repeatfinder
-Homepage: http://www.cbcb.umd.edu/software/RepeatFinder/
-License: Artistic
-Pkg-Description: finding repetitive sequences complete and draft genomes
+X-Depends: repeatfinder
+X-Homepage: http://www.cbcb.umd.edu/software/RepeatFinder/
+X-License: Artistic
+X-Pkg-Description: finding repetitive sequences complete and draft genomes
  Two programs for finding repeats in genomic DNA sequences.  The first
  program, described in the paper by Volfovsky et al. (2001) Genome
  Biology is RepeatFinder.  A second program, designed specifically to
@@ -1086,15 +1086,16 @@
  different purposes; RepeatFinder is intended to be the more
  comprehensive approach.  Note that RepeatFinder depends on Stefan
  Kurtz's REPuter.
-Note: Other sequence analysis tools (http://www.cbcb.umd.edu/software/)
-
-Depends: reputer
-Homepage: http://citeseer.ist.psu.edu/kurtz95reputer.html
-License: non-commercial
-Pkg-Description: fast computation of maximal repeats in complete genomes
+X-Note: Depends from non-distributable code reputer (see below)
+
+X-Depends: reputer
+X-Homepage: http://citeseer.ist.psu.edu/kurtz95reputer.html
+X-License: non-commercial
+X-Pkg-Description: fast computation of maximal repeats in complete genomes
  A software tool was implemented that computes exact repeats and
  palindromes in entire genomes very efficiently.
-Note: Download site (temporarily) not available - try to contact author
+X-Note: Code is not redistributable see mailing list discussion at
+ http://lists.debian.org/debian-med/2012/07/msg00195.html
 
 Depends: uniprime
 Homepage: http://code.google.com/p/uniprime/