[Blends-commit] r3512 - in /projects/pan/trunk/debian-pan/tasks: coherent-diffraction control-systems control-systems-dev data-reduction-frameworks data-reduction-frameworks-dev mx small-angle-scattering tomography
picca at users.alioth.debian.org
picca at users.alioth.debian.org
Wed Jul 18 20:38:48 UTC 2012
Author: picca
Date: Wed Jul 18 20:38:48 2012
New Revision: 3512
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3512
Log:
start to create tasks (work in progress)
Added:
projects/pan/trunk/debian-pan/tasks/coherent-diffraction
projects/pan/trunk/debian-pan/tasks/control-systems
projects/pan/trunk/debian-pan/tasks/control-systems-dev
projects/pan/trunk/debian-pan/tasks/data-reduction-frameworks
projects/pan/trunk/debian-pan/tasks/data-reduction-frameworks-dev
projects/pan/trunk/debian-pan/tasks/mx
projects/pan/trunk/debian-pan/tasks/small-angle-scattering
projects/pan/trunk/debian-pan/tasks/tomography
Added: projects/pan/trunk/debian-pan/tasks/coherent-diffraction
URL: http://svn.debian.org/wsvn/blends/projects/pan/trunk/debian-pan/tasks/coherent-diffraction?rev=3512&op=file
==============================================================================
--- projects/pan/trunk/debian-pan/tasks/coherent-diffraction (added)
+++ projects/pan/trunk/debian-pan/tasks/coherent-diffraction Wed Jul 18 20:38:48 2012
@@ -1,0 +1,1150 @@
+Task: unsorted
+Description: PAN Debian all packages
+ This metapackage will install all PAN Blend packages. This is
+ a temporary package until we sorted all packages into the right
+ categories.
+
+X-Begin-Category: Synchrotron machine
+
+Suggests: spectra
+Homepage: http://radiant.harima.riken.go.jp/spectra/
+License: ?
+Pkg-Description: calculate optical properties of synchrotron radiation
+ emitted from bending magnets, wigglers.
+
+Comment: http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/software.shtml
+
+X-End-Category: Synchrotron machine
+
+X-Begin-Category: Data acquisition
+
+Depends: ghkl
+
+Suggests: lima
+Homepage: http://lima.blissgarden.org/index.html
+License: GPL3+
+Pkg-Description: Library for Image Acquisition
+
+Suggests: opengda
+Homepage: http://www.opengda.org
+License: ?
+Pkg-Description: ?
+
+Depends: tango-db, tango-starter, tango-accesscontrol
+
+Suggests: tomographie-preexperiment-data-collector
+Homepage: https://bitbucket.org/Ingvord/tomography-preexperiment-data-collector/wiki/Home
+License: GPL2+
+Pkg-Description: gather all information from the user that can be
+ provided prior to the tomography experiment.
+
+X-End-Category: Data acquisition
+
+X-Begin-Category: Data Analysis
+
+Suggests: bsl
+Homepage: http://www.small-angle.ac.uk/dms/small-angle/linux/bsl-tar/bsl.tar.gz
+License: ?
+Pkg-Description: small angle scattering
+Comment: binary only
+
+Suggests: cdma
+Homepage: http://code.google.com/p/cdma/
+License: ?
+Pkg-Description: Common Data Model API
+
+Suggests: comete
+Homepage: http://sourceforge.net/apps/trac/comete/
+License: ?
+Pkg-Description: widget toolkit
+
+Suggests: coot
+WNPP: 531904
+Homepage:http://biop.ox.ac.uk/coot/
+License: GPLv3 GPLv2+ LGPLv3
+Pkg-Description: Crystallographic Object-Oriented Toolkit
+
+Suggests: cpl
+WNPP: 641628
+Homepage: http://www.eso.org/sci/software/cpl/
+License: GPL2+
+Pkg-Description: ESO Common Pipeline Library
+
+Suggests: dawn
+Homepage: http://www.dawb.org/
+License: ?
+Pkg-Description: general purpose data acquisition and processing
+
+Suggests: diffraction-ring-profiler
+Homepage: http://code.google.com/p/diffraction-ring-profiler/
+License: GPL3+
+Pkg-Description: A program for extracting electron diffraction ring pattern profiles
+
+Suggests: disp
+Homepage: http://code.google.com/p/disp/
+License: GPL2+
+Pkg-Description: Diffraction Image Statistics Package for R
+
+Suggests: edna
+Homepage: http://www.edna-site.org
+License: GPL3+ LGPL3+
+Pkg-Description: Framework to build online data analysis programs
+
+Depends: python-fabio
+
+Suggests: fit2d
+Homepage: http://www.esrf.eu/computing/scientific/FIT2D/
+License: ?
+Comment: binary only
+Pkg-Description: ?
+
+Suggests: fitgisaxs
+Homepage: http://lmp.sp2mi.univ-poitiers.fr/en/index.php?option=com_content&task=view&id=124&Itemid=42
+License: ?
+Comment: IgorPro software
+Pkg-Description: ?
+
+Depends: fityk
+
+Suggests: freeart
+Homepage: https://forge.epn-campus.eu/projects/freeart
+License: LGPL
+Pkg-Description: SART reconstruction algorithm
+
+Suggests: fullprof
+Homepage: http://www.ill.eu/sites/fullprof
+License: ?
+Comment: binary only
+Pkg-Description: ?
+
+Depends: g3data
+
+Depends: gnuplot
+
+Suggests: graphlab
+Homepage: http://graphlab.org/
+License: Apache License
+Pkg-Description: A New Parallel Framework for Machine Learning
+
+Depends: python-guidata
+
+Depends: python-guiqwt
+
+Suggests: gsas
+Homepage: ftp://ftp.ncnr.nist.gov/pub/cryst/gsas/LINUX_gsas+expgui.tar.gz
+License: ?
+Pkg-Description: ?
+
+Suggests: gumtree
+Homepage: http://docs.codehaus.org/display/GUMTREE/Home
+License: ?
+Pkg-Description: general purpose data acq and processing
+
+Suggests: hawk
+Homepage: http://xray.bmc.uu.se/hawk/
+License: ?
+Pkg-Description: diffraction pattern reconstruction
+
+Depends: ifeffit
+
+Depends: imagej
+
+Suggests: imagej-pluggins-tomo
+Homepage: https://www.cells.es/Members/cpascual/files/public/scisoft_files/imagej-tomo-plugins/at_download
+License: ?
+Pkg-Description: ?
+
+Suggests: isgisaxs
+Homepage: http://ln-www.insp.upmc.fr/axe4/Oxydes/IsGISAXS/isgisaxs.htm
+License: GPL3+
+Pkg-Description: gisaxs -- diffraction
+
+Suggests: jpowder
+Homepage: http://www.jpowder.org/
+License: GPL3+
+Pkg-Description: Lightweight powder diffraction data visualizer
+
+Depends: kile
+
+Suggests: mantid
+Homepage: http://www.mantidproject.org/Main_Page
+License: ?
+Pkg-Description: ?
+
+Suggests: micromanager
+WNPP: 646853
+Homepage: http://valelab.ucsf.edu/~MM/MMwiki/
+
+Suggests: mmdb
+WNPP: 679982
+Homepage: http://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/mmdb.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/mmdb.git
+Pkg-Description: MMDB is designed to assist developers in working with macromolecular coordinate
+ files. The library handles both PDB and mmCIF format files.
+ .
+ The Library also features an internal binary format, portable between different
+ platforms. This is achieved at uniformity of the Library's interface functions,
+ so that there is no difference in handling different formats.
+ .
+ MMDB provides various high-level tools for working with coordinate files,
+ including reading and writing, orthogonal-fractional transforms, generation of
+ symmetry mates, editing the molecular structure and more.
+ .
+ MMDB is previously written by Eugene Krissinel, and is distributed as a part of
+ the CCP4 suite. This project maintains a current stand-alone version of the library.
+
+Suggests: mmtk
+WNPP: 642586
+Homepage: http://dirac.cnrs-orleans.fr/MMTK/
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/mmtk.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/mmtk.git
+Pkg-Description: The Molecular Modelling Toolkit (MMTK) is an Open Source program library
+ for molecular simulation applications.
+ In addition to providing ready-to-use implementations of standard
+ algorithms, MMTK serves as a code basis that can be easily extended and
+ modified to deal with standard and non-standard problems in molecular
+ simulations.
+ MMTK is a package consisting of various modules, most of them written in
+ Python, and some in C.
+
+Suggests: nmoldyn
+Homepage: http://dirac.cnrs-orleans.fr/plone/software/nmoldyn/
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/nmoldyn.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/nmoldyn.git
+Pkg-Description: ?
+
+Depends: libnexus0, libnexus0-java, libnexus0-python, nexus-tools
+
+Depends: ngraph-gtk
+
+Depends: objcryst-fox
+
+Depends: octave
+
+Suggests: phenix
+Homepage: http://phenix-online.org
+License: ?
+Pkg-Description: automated determination of macromolecular structures
+
+Depends: pyfai
+
+Depends: pymca
+
+Suggests: pynx
+Homepage: http://sourceforge.net/apps/mediawiki/pynx/index.php?title=Main_Page
+License: CeCILL-B
+Pkg-Description: Python tools for Nano-structures Crystallography
+
+Suggests: prestopronto
+Homepage: http://code.google.com/p/prestopronto
+License:GPL3+
+Pkg-Description: Software for analysis of Quick Exafs data
+
+Depends: qtiplot
+
+Depends: qtoctave
+
+Suggests: sastbx
+Homepage: http://sastbx.als.lbl.gov/wiki/index.php/Main_Page
+License: ?
+Pkg-Description: Small angle scattering
+
+Depends: scilab
+
+Depends: sixpack
+
+Depends: spd
+
+Depends: spyder
+
+Suggests: thredds
+WNPP: 650261
+Homepage: http://www.unidata.ucar.edu/software/tds/
+License: MIT
+Pkg-Description: The THREDDS Data Server (TDS) is a web server that
+ provides metadata and data access for scientific datasets, using
+ OPeNDAP, OGC WMS and WCS, HTTP, and other remote data access
+ protocols.
+
+Suggests: threeb
+Homepage: http://www.coxphysics.com/3b
+License: GPL3+
+Pkg-Description: 3B Microscopy Analysis Software. Bayesian analysis of
+ blinking and bleaching, or 3B microscopy, is a method which analyses
+ data in which many overlapping fluorophores undergo bleaching and
+ blinking events, giving the structure at enhanced resolution. By
+ using a Hidden Markov Model (HMM), it allows useful information to be
+ obtained from data that would be impossible to analyse with standard
+ localisation analysis techniques.
+
+Depends: vistrails
+
+Suggests: xrdua
+Homepage: http://sourceforge.net/projects/xrdua/
+License: GPL3+
+Pkg-Description: X-ray Powder Diffraction
+Comment: test if it works with gdl
+
+Depends: libxy-bin
+
+Depends: xmaxima
+
+Suggests: xotoko
+Homepage: http://www.small-angle.ac.uk/small-angle/Software/XOTOKO.html
+License: non-free
+Pkg-Description: XOTOKO is a 1-D interactive data manipulation package
+ for (X,Y) data. The program is has a w ide range of applications even
+ if some of the instructions and options are specific to X-ray
+ applications. OTOKO was originally developed in Hamburg in the 70's
+ by P.Bendall, M.Koch and J.Bordas. The program was transferred to
+ Daresbury in the mid 80's where it was restructured and enhanced by
+ J.Bordas and G.Mant. The program is now available for all major
+ hardware platforms (Sun, HP, DEC, SG, PC Linux) in two varieties
+ otoko and xotoko. The former runs on character based terminals and
+ the latter on X windows based workstations. A PC based version is
+ also available from M.Koch (Hamburg). This manual is based on
+ contributions from the original authors and R.Rule (ICI, Runcorn).
+Comment: binary-only
+
+X-End-Category: Data Analysis
+
+X-Begin-Category: PXSoft
+Comment: PXSoft from ESRF: mainly non-free software, non
+ redistributable code for protein crystallography. Here the url to the
+ pxsoft at the esrf
+ http://www.esrf.eu/UsersAndScience/Experiments/MX/Software/PXSOFT/
+ list of all availables package in the pxsoft directory, which one
+ need to be packaged and wich one did not ? Is it possible for the
+ esrf to tell which of thoses software are required ?, maybe there is
+ very old obsolete soft.
+
+Suggests: 3dna
+Homepage: http://x3dna.org/
+License: non-free
+Pkg-Description: 3DNA is a versatile, integrated software system for
+ the analysis, rebuilding and visualization of three-dimensional
+ nucleic-acid-containing structures. The software is applicable not
+ only to DNA (as the name 3DNA may imply), but also to complicated RNA
+ structures and DNA-protein complexes. In 3DNA, structural analysis
+ and model rebuilding are two sides of the same coin: the description
+ of structure is rigorous and reversible, thus allowing for its exact
+ reconstruction based on the derived parameters. 3DNA automatically
+ detects all non-cannonical base pairs, base triplets and higher-order
+ associations, and coaxially stacked helices; provides a comprehensive
+ collection of fiber models of regular DNA and RNA helices; generates
+ highly effective schematic presentations that reveal key features of
+ nucleic-acid structures; performs undisturbed base mutations, and
+ have facilities for the analysis of molecular dynamics simulation
+ trajectories.
+Comment: binary-only
+
+Suggests: adxv
+Homepage: http://www.scripps.edu/~arvai/adxv.html
+License: non-free
+Pkg-Description: The principal application of adxv is to display
+ protein crystallography X-Ray diffraction data. The data may be
+ displayed as a 2-D image, 3-D wire mesh or as integer pixel
+ values. Data may be saved as either tiff or postscript files. Adxv
+ will display data from most current detectors:
+ .
+ * ADSC ccd
+ * Mar ccd
+ * Mar image plate (old and new format)
+ * Raxis II & IV
+ * Fuji image plate
+ * Crystallographic Binary Format (CBF)
+ * XDS .pck files
+ * European Data Format (EDF)
+ * NUMPY (NPY)
+ * Raw binary 8, 16, 32 & 64 bit integer data
+Comment: binary-only
+
+Suggests: aimless
+Homepage: http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html
+License: ?
+Pkg-Description: This program scales together multiple observations of
+ reflections, and merges multiple observations into an average
+ intensity: it is a successor program to SCALA
+ .
+ Various scaling
+ models can be used. The scale factor is a function of the primary
+ beam direction, either as a smooth function of Phi (the rotation
+ angle ROT), or expressed as BATCH (image) number (deprecated). In
+ addition, the scale may be a function of the secondary beam
+ direction, acting principally as an absorption correction expanded as
+ spherical harmonics. The secondary beam correction is related to the
+ absorption anisotropy correction described by Blessing (Ref Blessing
+ (1995) ).
+ .
+ The merging algorithm analyses the data for outliers, and gives
+ detailed analyses. It generates a weighted mean of the observations
+ of the same reflection, after rejecting the outliers.
+ .
+ The program does several passes through the data:
+ .
+ * initial estimate of the scales
+ * first round scale refinement, using strong data using an I/sigma(I) cutoff
+ * first round of outlier rejection
+ * if both summation and profile-fitted intensity estimates are
+ present (from Mosflm), then the cross-over point is determined
+ between using profile-fitted for weak data and summation for
+ strong data.
+ * first analysis pass to refine the "corrections" to the standard deviation estimates
+ * final round scale refinement, using strong data within limits on the normalised intensity |E|^2
+ * final analysis pass to refine the "corrections" to the standard deviation estimates
+ * final outlier rejections
+ * a final pass to apply scales, analyse agreement & write the output
+ file, usually with merged intensities, but alternatively as file
+ with scaled but unmerged observations, with partials summed and
+ outliers rejected, for each dataset
+ .
+ Anomalous scattering is ignored during the scale determination (I+ &
+ I- observations are treated together), but the merged file always
+ contains I+ & I-, even if the ANOMALOUS OFF command is
+ used. Switching ANOMALOUS ON does affect the statistics and the
+ outlier rejection (qv)
+
+Suggests: albula
+Homepage: http://www.dectris.ch/software_albula.html
+Pkg-Description: Dectris diffraction image viewer and analysis tool
+
+Depends: apbs
+
+Suggests: aplx
+Homepage: http://www.microapl.co.uk/apl
+License: non-free
+Comment: non-free APL language is it really usefull ?
+Pkg-Description: ?
+
+Suggests: atsas
+Homepage: http://www.embl-hamburg.de/biosaxs/software.html
+License: ?
+Comment: which part of the suite is used ?
+Pkg-Description: ?
+
+Depends: autodock
+
+Suggests: autoproc
+Homepage: http://www.globalphasing.com/autoproc
+License: non-free
+Pkg-Description: ?
+
+Depends: openbabel
+
+Suggests: balbes
+Homepage: http://www.ysbl.york.ac.uk/~fei/balbes
+License: ?
+Pkg-Description: ?
+Comment: need ccp4
+
+Suggests: best
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: bioxhit
+Homepage: http://www.bioxhit.org
+License: ?
+Pkg-Description: ?
+
+Suggests: biox-xds
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: bobscript
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: bp3_old
+Homepage: ?
+Comment: old means useless ?
+Pkg-Description: ?
+
+Suggests: c3d
+Homepage: ?
+Comment: file format ?
+Pkg-Description: ?
+
+Suggests: cath
+Homepage: http://www.cathdb.info
+Comment: used ?
+Pkg-Description: ?
+
+Suggests: ccp4
+Homepage: http://www.ccp4.ac.uk
+Pkg-Description: ?
+
+Suggests: cctbx
+WNPP: 679905
+Homepage: http://cctbx.sourceforge.net
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/cctbx.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/cctbx.git
+Pkg-Description: CCTBX is a toolbox for developing crystallographic
+ software. It provides fundamental and advanced methods and algorithms
+ usefull in the scientific fields of crystallography[1], chemistry,
+ physics and biology. It also provides Libraries for general
+ scientific computing. The package is organized as a set of ISO C++
+ classes with Python bindings.
+
+Suggests: chart
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: chimera
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: chooch
+Homepage: ?
+Pkg-Description: ?
+
+Depends: clustalw
+
+Suggests: cn2coot
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: cns_refine
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: cns_solve
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: coot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: crank
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: crystfel
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: das
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dialboxlinuxdriverdialbox_to_remove
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: dino
+
+Suggests: dna
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: domain-finder
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dps2ar
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dviewer
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dyndom3d
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: edna
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: edna2html
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: elves
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: epmr
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: escet
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: evrouter
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: fit2d
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: fobscom
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: gnuplot
+
+Suggests: gramm
+Homepage: http://vakser.bioinformatics.ku.edu/main/resources_gramm.php
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: grasp
+Homepage: http://www.doe-mbi.ucla.edu/Software/GRASP.html
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: ha_ncs
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: harker
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hbplus
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hca
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hkl2map
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hyss
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: imagej
+
+Suggests: imosflm
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: induced-rad-dam
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ipymol
+Homepage: http://www.sbgrid.org/news/newsletters/2007/11
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: ispyb-client
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: default-jdk
+Depends: jmol
+
+Suggests: labelit
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: lam
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: laue
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: liged
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ligplot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ligplus
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: lscale
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: maid
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: main
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: mar345
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: marutils
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: mercury
+Homepage: http://www.ccdc.cam.ac.uk/free_services/mercury
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: mgltools-pmv
+
+Suggests: mlfsom
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: molscriptmolscript-2.1.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: mosflm
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: msi
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: nuccyl
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: nucplot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: onoono80ono90
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pgplot_5.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phaser
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phaser_sad
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phases
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phenix
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pirate
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: plotmtv
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pointless
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: povray
+
+Suggest: powder
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: promotif
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pxpy
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: pymol
+
+Depends: python
+
+Suggests: raddose
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: rasmol
+
+Depends: raster3d
+
+Suggests: refmac
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: replace
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ribbons
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ringer
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: rmerge
+Comment: hugins-tools ?
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: rosetta
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: rtools
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: saxs
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: saxsview
+Homepage: http://saxsview.sourceforge.net
+License: GPL3+
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: scala_mpi
+Comment: scala packages ?
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: scsh-0.5.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: shakerr
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sharp
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: shelx
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sir
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sir2002
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: snb2.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: snow
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: solvesolve-2.08
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: stac-stac2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: strategy
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: surfnet
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: tcltkblt
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: testcase
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: test_exec
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: textal
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: theseus
+
+Suggests: tools
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: tops
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: usf
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: viewhkl
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: wink
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: workflow-ds
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: workflow-executor
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xds
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xiaxia2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xprep
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xrec
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xtalview
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+X-End-Category: PXSoft
Added: projects/pan/trunk/debian-pan/tasks/control-systems
URL: http://svn.debian.org/wsvn/blends/projects/pan/trunk/debian-pan/tasks/control-systems?rev=3512&op=file
==============================================================================
--- projects/pan/trunk/debian-pan/tasks/control-systems (added)
+++ projects/pan/trunk/debian-pan/tasks/control-systems Wed Jul 18 20:38:48 2012
@@ -1,0 +1,26 @@
+Task: control-systems
+Description: PAN Blend constrol systems
+ This metapackage will install constrol-system used on PAN facilities.
+Comment: Improve the description
+
+Depends: ghkl
+
+Suggests: lima
+Homepage: http://lima.blissgarden.org/index.html
+License: GPL3+
+Pkg-Description: Library for Image Acquisition
+
+Suggests: opengda
+Homepage: http://www.opengda.org
+License: ?
+Pkg-Description: ?
+
+Depends: python-taurus
+
+Depends: tango-db, tango-starter, tango-accesscontrol
+
+Suggests: tomographie-preexperiment-data-collector
+Homepage: https://bitbucket.org/Ingvord/tomography-preexperiment-data-collector/wiki/Home
+License: GPL2+
+Pkg-Description: gather all information from the user that can be
+ provided prior to the tomography experiment.
Added: projects/pan/trunk/debian-pan/tasks/control-systems-dev
URL: http://svn.debian.org/wsvn/blends/projects/pan/trunk/debian-pan/tasks/control-systems-dev?rev=3512&op=file
==============================================================================
--- projects/pan/trunk/debian-pan/tasks/control-systems-dev (added)
+++ projects/pan/trunk/debian-pan/tasks/control-systems-dev Wed Jul 18 20:38:48 2012
@@ -1,0 +1,19 @@
+Task: control-systems-dev
+Description: PAN Blend constrol systems developpement This metapackage
+ will install developpement files used when you develop a control
+ system.
+Comment: Improve the description
+
+Depends: libhkl4-dev
+
+Depends: libtango7-dev
+
+Suggests: cdma
+Homepage: http://code.google.com/p/cdma/
+License: ?
+Pkg-Description: Common Data Model API
+
+Suggests: comete
+Homepage: http://sourceforge.net/apps/trac/comete/
+License: ?
+Pkg-Description: widget toolkit
Added: projects/pan/trunk/debian-pan/tasks/data-reduction-frameworks
URL: http://svn.debian.org/wsvn/blends/projects/pan/trunk/debian-pan/tasks/data-reduction-frameworks?rev=3512&op=file
==============================================================================
--- projects/pan/trunk/debian-pan/tasks/data-reduction-frameworks (added)
+++ projects/pan/trunk/debian-pan/tasks/data-reduction-frameworks Wed Jul 18 20:38:48 2012
@@ -1,0 +1,1150 @@
+Task: unsorted
+Description: PAN Debian all packages
+ This metapackage will install all PAN Blend packages. This is
+ a temporary package until we sorted all packages into the right
+ categories.
+
+X-Begin-Category: Synchrotron machine
+
+Suggests: spectra
+Homepage: http://radiant.harima.riken.go.jp/spectra/
+License: ?
+Pkg-Description: calculate optical properties of synchrotron radiation
+ emitted from bending magnets, wigglers.
+
+Comment: http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/software.shtml
+
+X-End-Category: Synchrotron machine
+
+X-Begin-Category: Data acquisition
+
+Depends: ghkl
+
+Suggests: lima
+Homepage: http://lima.blissgarden.org/index.html
+License: GPL3+
+Pkg-Description: Library for Image Acquisition
+
+Suggests: opengda
+Homepage: http://www.opengda.org
+License: ?
+Pkg-Description: ?
+
+Depends: tango-db, tango-starter, tango-accesscontrol
+
+Suggests: tomographie-preexperiment-data-collector
+Homepage: https://bitbucket.org/Ingvord/tomography-preexperiment-data-collector/wiki/Home
+License: GPL2+
+Pkg-Description: gather all information from the user that can be
+ provided prior to the tomography experiment.
+
+X-End-Category: Data acquisition
+
+X-Begin-Category: Data Analysis
+
+Suggests: bsl
+Homepage: http://www.small-angle.ac.uk/dms/small-angle/linux/bsl-tar/bsl.tar.gz
+License: ?
+Pkg-Description: small angle scattering
+Comment: binary only
+
+Suggests: cdma
+Homepage: http://code.google.com/p/cdma/
+License: ?
+Pkg-Description: Common Data Model API
+
+Suggests: comete
+Homepage: http://sourceforge.net/apps/trac/comete/
+License: ?
+Pkg-Description: widget toolkit
+
+Suggests: coot
+WNPP: 531904
+Homepage:http://biop.ox.ac.uk/coot/
+License: GPLv3 GPLv2+ LGPLv3
+Pkg-Description: Crystallographic Object-Oriented Toolkit
+
+Suggests: cpl
+WNPP: 641628
+Homepage: http://www.eso.org/sci/software/cpl/
+License: GPL2+
+Pkg-Description: ESO Common Pipeline Library
+
+Suggests: dawn
+Homepage: http://www.dawb.org/
+License: ?
+Pkg-Description: general purpose data acquisition and processing
+
+Suggests: diffraction-ring-profiler
+Homepage: http://code.google.com/p/diffraction-ring-profiler/
+License: GPL3+
+Pkg-Description: A program for extracting electron diffraction ring pattern profiles
+
+Suggests: disp
+Homepage: http://code.google.com/p/disp/
+License: GPL2+
+Pkg-Description: Diffraction Image Statistics Package for R
+
+Suggests: edna
+Homepage: http://www.edna-site.org
+License: GPL3+ LGPL3+
+Pkg-Description: Framework to build online data analysis programs
+
+Depends: python-fabio
+
+Suggests: fit2d
+Homepage: http://www.esrf.eu/computing/scientific/FIT2D/
+License: ?
+Comment: binary only
+Pkg-Description: ?
+
+Suggests: fitgisaxs
+Homepage: http://lmp.sp2mi.univ-poitiers.fr/en/index.php?option=com_content&task=view&id=124&Itemid=42
+License: ?
+Comment: IgorPro software
+Pkg-Description: ?
+
+Depends: fityk
+
+Suggests: freeart
+Homepage: https://forge.epn-campus.eu/projects/freeart
+License: LGPL
+Pkg-Description: SART reconstruction algorithm
+
+Suggests: fullprof
+Homepage: http://www.ill.eu/sites/fullprof
+License: ?
+Comment: binary only
+Pkg-Description: ?
+
+Depends: g3data
+
+Depends: gnuplot
+
+Suggests: graphlab
+Homepage: http://graphlab.org/
+License: Apache License
+Pkg-Description: A New Parallel Framework for Machine Learning
+
+Depends: python-guidata
+
+Depends: python-guiqwt
+
+Suggests: gsas
+Homepage: ftp://ftp.ncnr.nist.gov/pub/cryst/gsas/LINUX_gsas+expgui.tar.gz
+License: ?
+Pkg-Description: ?
+
+Suggests: gumtree
+Homepage: http://docs.codehaus.org/display/GUMTREE/Home
+License: ?
+Pkg-Description: general purpose data acq and processing
+
+Suggests: hawk
+Homepage: http://xray.bmc.uu.se/hawk/
+License: ?
+Pkg-Description: diffraction pattern reconstruction
+
+Depends: ifeffit
+
+Depends: imagej
+
+Suggests: imagej-pluggins-tomo
+Homepage: https://www.cells.es/Members/cpascual/files/public/scisoft_files/imagej-tomo-plugins/at_download
+License: ?
+Pkg-Description: ?
+
+Suggests: isgisaxs
+Homepage: http://ln-www.insp.upmc.fr/axe4/Oxydes/IsGISAXS/isgisaxs.htm
+License: GPL3+
+Pkg-Description: gisaxs -- diffraction
+
+Suggests: jpowder
+Homepage: http://www.jpowder.org/
+License: GPL3+
+Pkg-Description: Lightweight powder diffraction data visualizer
+
+Depends: kile
+
+Suggests: mantid
+Homepage: http://www.mantidproject.org/Main_Page
+License: ?
+Pkg-Description: ?
+
+Suggests: micromanager
+WNPP: 646853
+Homepage: http://valelab.ucsf.edu/~MM/MMwiki/
+
+Suggests: mmdb
+WNPP: 679982
+Homepage: http://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/mmdb.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/mmdb.git
+Pkg-Description: MMDB is designed to assist developers in working with macromolecular coordinate
+ files. The library handles both PDB and mmCIF format files.
+ .
+ The Library also features an internal binary format, portable between different
+ platforms. This is achieved at uniformity of the Library's interface functions,
+ so that there is no difference in handling different formats.
+ .
+ MMDB provides various high-level tools for working with coordinate files,
+ including reading and writing, orthogonal-fractional transforms, generation of
+ symmetry mates, editing the molecular structure and more.
+ .
+ MMDB is previously written by Eugene Krissinel, and is distributed as a part of
+ the CCP4 suite. This project maintains a current stand-alone version of the library.
+
+Suggests: mmtk
+WNPP: 642586
+Homepage: http://dirac.cnrs-orleans.fr/MMTK/
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/mmtk.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/mmtk.git
+Pkg-Description: The Molecular Modelling Toolkit (MMTK) is an Open Source program library
+ for molecular simulation applications.
+ In addition to providing ready-to-use implementations of standard
+ algorithms, MMTK serves as a code basis that can be easily extended and
+ modified to deal with standard and non-standard problems in molecular
+ simulations.
+ MMTK is a package consisting of various modules, most of them written in
+ Python, and some in C.
+
+Suggests: nmoldyn
+Homepage: http://dirac.cnrs-orleans.fr/plone/software/nmoldyn/
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/nmoldyn.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/nmoldyn.git
+Pkg-Description: ?
+
+Depends: libnexus0, libnexus0-java, libnexus0-python, nexus-tools
+
+Depends: ngraph-gtk
+
+Depends: objcryst-fox
+
+Depends: octave
+
+Suggests: phenix
+Homepage: http://phenix-online.org
+License: ?
+Pkg-Description: automated determination of macromolecular structures
+
+Depends: pyfai
+
+Depends: pymca
+
+Suggests: pynx
+Homepage: http://sourceforge.net/apps/mediawiki/pynx/index.php?title=Main_Page
+License: CeCILL-B
+Pkg-Description: Python tools for Nano-structures Crystallography
+
+Suggests: prestopronto
+Homepage: http://code.google.com/p/prestopronto
+License:GPL3+
+Pkg-Description: Software for analysis of Quick Exafs data
+
+Depends: qtiplot
+
+Depends: qtoctave
+
+Suggests: sastbx
+Homepage: http://sastbx.als.lbl.gov/wiki/index.php/Main_Page
+License: ?
+Pkg-Description: Small angle scattering
+
+Depends: scilab
+
+Depends: sixpack
+
+Depends: spd
+
+Depends: spyder
+
+Suggests: thredds
+WNPP: 650261
+Homepage: http://www.unidata.ucar.edu/software/tds/
+License: MIT
+Pkg-Description: The THREDDS Data Server (TDS) is a web server that
+ provides metadata and data access for scientific datasets, using
+ OPeNDAP, OGC WMS and WCS, HTTP, and other remote data access
+ protocols.
+
+Suggests: threeb
+Homepage: http://www.coxphysics.com/3b
+License: GPL3+
+Pkg-Description: 3B Microscopy Analysis Software. Bayesian analysis of
+ blinking and bleaching, or 3B microscopy, is a method which analyses
+ data in which many overlapping fluorophores undergo bleaching and
+ blinking events, giving the structure at enhanced resolution. By
+ using a Hidden Markov Model (HMM), it allows useful information to be
+ obtained from data that would be impossible to analyse with standard
+ localisation analysis techniques.
+
+Depends: vistrails
+
+Suggests: xrdua
+Homepage: http://sourceforge.net/projects/xrdua/
+License: GPL3+
+Pkg-Description: X-ray Powder Diffraction
+Comment: test if it works with gdl
+
+Depends: libxy-bin
+
+Depends: xmaxima
+
+Suggests: xotoko
+Homepage: http://www.small-angle.ac.uk/small-angle/Software/XOTOKO.html
+License: non-free
+Pkg-Description: XOTOKO is a 1-D interactive data manipulation package
+ for (X,Y) data. The program is has a w ide range of applications even
+ if some of the instructions and options are specific to X-ray
+ applications. OTOKO was originally developed in Hamburg in the 70's
+ by P.Bendall, M.Koch and J.Bordas. The program was transferred to
+ Daresbury in the mid 80's where it was restructured and enhanced by
+ J.Bordas and G.Mant. The program is now available for all major
+ hardware platforms (Sun, HP, DEC, SG, PC Linux) in two varieties
+ otoko and xotoko. The former runs on character based terminals and
+ the latter on X windows based workstations. A PC based version is
+ also available from M.Koch (Hamburg). This manual is based on
+ contributions from the original authors and R.Rule (ICI, Runcorn).
+Comment: binary-only
+
+X-End-Category: Data Analysis
+
+X-Begin-Category: PXSoft
+Comment: PXSoft from ESRF: mainly non-free software, non
+ redistributable code for protein crystallography. Here the url to the
+ pxsoft at the esrf
+ http://www.esrf.eu/UsersAndScience/Experiments/MX/Software/PXSOFT/
+ list of all availables package in the pxsoft directory, which one
+ need to be packaged and wich one did not ? Is it possible for the
+ esrf to tell which of thoses software are required ?, maybe there is
+ very old obsolete soft.
+
+Suggests: 3dna
+Homepage: http://x3dna.org/
+License: non-free
+Pkg-Description: 3DNA is a versatile, integrated software system for
+ the analysis, rebuilding and visualization of three-dimensional
+ nucleic-acid-containing structures. The software is applicable not
+ only to DNA (as the name 3DNA may imply), but also to complicated RNA
+ structures and DNA-protein complexes. In 3DNA, structural analysis
+ and model rebuilding are two sides of the same coin: the description
+ of structure is rigorous and reversible, thus allowing for its exact
+ reconstruction based on the derived parameters. 3DNA automatically
+ detects all non-cannonical base pairs, base triplets and higher-order
+ associations, and coaxially stacked helices; provides a comprehensive
+ collection of fiber models of regular DNA and RNA helices; generates
+ highly effective schematic presentations that reveal key features of
+ nucleic-acid structures; performs undisturbed base mutations, and
+ have facilities for the analysis of molecular dynamics simulation
+ trajectories.
+Comment: binary-only
+
+Suggests: adxv
+Homepage: http://www.scripps.edu/~arvai/adxv.html
+License: non-free
+Pkg-Description: The principal application of adxv is to display
+ protein crystallography X-Ray diffraction data. The data may be
+ displayed as a 2-D image, 3-D wire mesh or as integer pixel
+ values. Data may be saved as either tiff or postscript files. Adxv
+ will display data from most current detectors:
+ .
+ * ADSC ccd
+ * Mar ccd
+ * Mar image plate (old and new format)
+ * Raxis II & IV
+ * Fuji image plate
+ * Crystallographic Binary Format (CBF)
+ * XDS .pck files
+ * European Data Format (EDF)
+ * NUMPY (NPY)
+ * Raw binary 8, 16, 32 & 64 bit integer data
+Comment: binary-only
+
+Suggests: aimless
+Homepage: http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html
+License: ?
+Pkg-Description: This program scales together multiple observations of
+ reflections, and merges multiple observations into an average
+ intensity: it is a successor program to SCALA
+ .
+ Various scaling
+ models can be used. The scale factor is a function of the primary
+ beam direction, either as a smooth function of Phi (the rotation
+ angle ROT), or expressed as BATCH (image) number (deprecated). In
+ addition, the scale may be a function of the secondary beam
+ direction, acting principally as an absorption correction expanded as
+ spherical harmonics. The secondary beam correction is related to the
+ absorption anisotropy correction described by Blessing (Ref Blessing
+ (1995) ).
+ .
+ The merging algorithm analyses the data for outliers, and gives
+ detailed analyses. It generates a weighted mean of the observations
+ of the same reflection, after rejecting the outliers.
+ .
+ The program does several passes through the data:
+ .
+ * initial estimate of the scales
+ * first round scale refinement, using strong data using an I/sigma(I) cutoff
+ * first round of outlier rejection
+ * if both summation and profile-fitted intensity estimates are
+ present (from Mosflm), then the cross-over point is determined
+ between using profile-fitted for weak data and summation for
+ strong data.
+ * first analysis pass to refine the "corrections" to the standard deviation estimates
+ * final round scale refinement, using strong data within limits on the normalised intensity |E|^2
+ * final analysis pass to refine the "corrections" to the standard deviation estimates
+ * final outlier rejections
+ * a final pass to apply scales, analyse agreement & write the output
+ file, usually with merged intensities, but alternatively as file
+ with scaled but unmerged observations, with partials summed and
+ outliers rejected, for each dataset
+ .
+ Anomalous scattering is ignored during the scale determination (I+ &
+ I- observations are treated together), but the merged file always
+ contains I+ & I-, even if the ANOMALOUS OFF command is
+ used. Switching ANOMALOUS ON does affect the statistics and the
+ outlier rejection (qv)
+
+Suggests: albula
+Homepage: http://www.dectris.ch/software_albula.html
+Pkg-Description: Dectris diffraction image viewer and analysis tool
+
+Depends: apbs
+
+Suggests: aplx
+Homepage: http://www.microapl.co.uk/apl
+License: non-free
+Comment: non-free APL language is it really usefull ?
+Pkg-Description: ?
+
+Suggests: atsas
+Homepage: http://www.embl-hamburg.de/biosaxs/software.html
+License: ?
+Comment: which part of the suite is used ?
+Pkg-Description: ?
+
+Depends: autodock
+
+Suggests: autoproc
+Homepage: http://www.globalphasing.com/autoproc
+License: non-free
+Pkg-Description: ?
+
+Depends: openbabel
+
+Suggests: balbes
+Homepage: http://www.ysbl.york.ac.uk/~fei/balbes
+License: ?
+Pkg-Description: ?
+Comment: need ccp4
+
+Suggests: best
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: bioxhit
+Homepage: http://www.bioxhit.org
+License: ?
+Pkg-Description: ?
+
+Suggests: biox-xds
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: bobscript
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: bp3_old
+Homepage: ?
+Comment: old means useless ?
+Pkg-Description: ?
+
+Suggests: c3d
+Homepage: ?
+Comment: file format ?
+Pkg-Description: ?
+
+Suggests: cath
+Homepage: http://www.cathdb.info
+Comment: used ?
+Pkg-Description: ?
+
+Suggests: ccp4
+Homepage: http://www.ccp4.ac.uk
+Pkg-Description: ?
+
+Suggests: cctbx
+WNPP: 679905
+Homepage: http://cctbx.sourceforge.net
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/cctbx.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/cctbx.git
+Pkg-Description: CCTBX is a toolbox for developing crystallographic
+ software. It provides fundamental and advanced methods and algorithms
+ usefull in the scientific fields of crystallography[1], chemistry,
+ physics and biology. It also provides Libraries for general
+ scientific computing. The package is organized as a set of ISO C++
+ classes with Python bindings.
+
+Suggests: chart
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: chimera
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: chooch
+Homepage: ?
+Pkg-Description: ?
+
+Depends: clustalw
+
+Suggests: cn2coot
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: cns_refine
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: cns_solve
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: coot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: crank
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: crystfel
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: das
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dialboxlinuxdriverdialbox_to_remove
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: dino
+
+Suggests: dna
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: domain-finder
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dps2ar
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dviewer
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dyndom3d
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: edna
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: edna2html
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: elves
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: epmr
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: escet
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: evrouter
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: fit2d
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: fobscom
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: gnuplot
+
+Suggests: gramm
+Homepage: http://vakser.bioinformatics.ku.edu/main/resources_gramm.php
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: grasp
+Homepage: http://www.doe-mbi.ucla.edu/Software/GRASP.html
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: ha_ncs
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: harker
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hbplus
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hca
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hkl2map
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hyss
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: imagej
+
+Suggests: imosflm
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: induced-rad-dam
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ipymol
+Homepage: http://www.sbgrid.org/news/newsletters/2007/11
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: ispyb-client
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: default-jdk
+Depends: jmol
+
+Suggests: labelit
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: lam
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: laue
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: liged
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ligplot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ligplus
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: lscale
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: maid
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: main
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: mar345
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: marutils
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: mercury
+Homepage: http://www.ccdc.cam.ac.uk/free_services/mercury
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: mgltools-pmv
+
+Suggests: mlfsom
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: molscriptmolscript-2.1.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: mosflm
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: msi
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: nuccyl
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: nucplot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: onoono80ono90
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pgplot_5.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phaser
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phaser_sad
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phases
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phenix
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pirate
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: plotmtv
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pointless
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: povray
+
+Suggest: powder
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: promotif
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pxpy
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: pymol
+
+Depends: python
+
+Suggests: raddose
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: rasmol
+
+Depends: raster3d
+
+Suggests: refmac
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: replace
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ribbons
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ringer
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: rmerge
+Comment: hugins-tools ?
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: rosetta
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: rtools
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: saxs
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: saxsview
+Homepage: http://saxsview.sourceforge.net
+License: GPL3+
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: scala_mpi
+Comment: scala packages ?
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: scsh-0.5.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: shakerr
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sharp
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: shelx
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sir
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sir2002
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: snb2.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: snow
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: solvesolve-2.08
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: stac-stac2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: strategy
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: surfnet
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: tcltkblt
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: testcase
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: test_exec
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: textal
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: theseus
+
+Suggests: tools
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: tops
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: usf
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: viewhkl
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: wink
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: workflow-ds
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: workflow-executor
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xds
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xiaxia2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xprep
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xrec
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xtalview
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+X-End-Category: PXSoft
Added: projects/pan/trunk/debian-pan/tasks/data-reduction-frameworks-dev
URL: http://svn.debian.org/wsvn/blends/projects/pan/trunk/debian-pan/tasks/data-reduction-frameworks-dev?rev=3512&op=file
==============================================================================
--- projects/pan/trunk/debian-pan/tasks/data-reduction-frameworks-dev (added)
+++ projects/pan/trunk/debian-pan/tasks/data-reduction-frameworks-dev Wed Jul 18 20:38:48 2012
@@ -1,0 +1,1151 @@
+Task: data-reduction-framework-dev
+Description: PAN Debian data reduction framework dev
+ This metapackage will install all PAN Blend packages. This is
+ a temporary package until we sorted all packages into the right
+ categories.
+comment: Improve the description
+
+X-Begin-Category: Synchrotron machine
+
+Suggests: spectra
+Homepage: http://radiant.harima.riken.go.jp/spectra/
+License: ?
+Pkg-Description: calculate optical properties of synchrotron radiation
+ emitted from bending magnets, wigglers.
+
+Comment: http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/software.shtml
+
+X-End-Category: Synchrotron machine
+
+X-Begin-Category: Data acquisition
+
+Depends: ghkl
+
+Suggests: lima
+Homepage: http://lima.blissgarden.org/index.html
+License: GPL3+
+Pkg-Description: Library for Image Acquisition
+
+Suggests: opengda
+Homepage: http://www.opengda.org
+License: ?
+Pkg-Description: ?
+
+Depends: tango-db, tango-starter, tango-accesscontrol
+
+Suggests: tomographie-preexperiment-data-collector
+Homepage: https://bitbucket.org/Ingvord/tomography-preexperiment-data-collector/wiki/Home
+License: GPL2+
+Pkg-Description: gather all information from the user that can be
+ provided prior to the tomography experiment.
+
+X-End-Category: Data acquisition
+
+X-Begin-Category: Data Analysis
+
+Suggests: bsl
+Homepage: http://www.small-angle.ac.uk/dms/small-angle/linux/bsl-tar/bsl.tar.gz
+License: ?
+Pkg-Description: small angle scattering
+Comment: binary only
+
+Suggests: cdma
+Homepage: http://code.google.com/p/cdma/
+License: ?
+Pkg-Description: Common Data Model API
+
+Suggests: comete
+Homepage: http://sourceforge.net/apps/trac/comete/
+License: ?
+Pkg-Description: widget toolkit
+
+Suggests: coot
+WNPP: 531904
+Homepage:http://biop.ox.ac.uk/coot/
+License: GPLv3 GPLv2+ LGPLv3
+Pkg-Description: Crystallographic Object-Oriented Toolkit
+
+Suggests: cpl
+WNPP: 641628
+Homepage: http://www.eso.org/sci/software/cpl/
+License: GPL2+
+Pkg-Description: ESO Common Pipeline Library
+
+Suggests: dawn
+Homepage: http://www.dawb.org/
+License: ?
+Pkg-Description: general purpose data acquisition and processing
+
+Suggests: diffraction-ring-profiler
+Homepage: http://code.google.com/p/diffraction-ring-profiler/
+License: GPL3+
+Pkg-Description: A program for extracting electron diffraction ring pattern profiles
+
+Suggests: disp
+Homepage: http://code.google.com/p/disp/
+License: GPL2+
+Pkg-Description: Diffraction Image Statistics Package for R
+
+Suggests: edna
+Homepage: http://www.edna-site.org
+License: GPL3+ LGPL3+
+Pkg-Description: Framework to build online data analysis programs
+
+Depends: python-fabio
+
+Suggests: fit2d
+Homepage: http://www.esrf.eu/computing/scientific/FIT2D/
+License: ?
+Comment: binary only
+Pkg-Description: ?
+
+Suggests: fitgisaxs
+Homepage: http://lmp.sp2mi.univ-poitiers.fr/en/index.php?option=com_content&task=view&id=124&Itemid=42
+License: ?
+Comment: IgorPro software
+Pkg-Description: ?
+
+Depends: fityk
+
+Suggests: freeart
+Homepage: https://forge.epn-campus.eu/projects/freeart
+License: LGPL
+Pkg-Description: SART reconstruction algorithm
+
+Suggests: fullprof
+Homepage: http://www.ill.eu/sites/fullprof
+License: ?
+Comment: binary only
+Pkg-Description: ?
+
+Depends: g3data
+
+Depends: gnuplot
+
+Suggests: graphlab
+Homepage: http://graphlab.org/
+License: Apache License
+Pkg-Description: A New Parallel Framework for Machine Learning
+
+Depends: python-guidata
+
+Depends: python-guiqwt
+
+Suggests: gsas
+Homepage: ftp://ftp.ncnr.nist.gov/pub/cryst/gsas/LINUX_gsas+expgui.tar.gz
+License: ?
+Pkg-Description: ?
+
+Suggests: gumtree
+Homepage: http://docs.codehaus.org/display/GUMTREE/Home
+License: ?
+Pkg-Description: general purpose data acq and processing
+
+Suggests: hawk
+Homepage: http://xray.bmc.uu.se/hawk/
+License: ?
+Pkg-Description: diffraction pattern reconstruction
+
+Depends: ifeffit
+
+Depends: imagej
+
+Suggests: imagej-pluggins-tomo
+Homepage: https://www.cells.es/Members/cpascual/files/public/scisoft_files/imagej-tomo-plugins/at_download
+License: ?
+Pkg-Description: ?
+
+Suggests: isgisaxs
+Homepage: http://ln-www.insp.upmc.fr/axe4/Oxydes/IsGISAXS/isgisaxs.htm
+License: GPL3+
+Pkg-Description: gisaxs -- diffraction
+
+Suggests: jpowder
+Homepage: http://www.jpowder.org/
+License: GPL3+
+Pkg-Description: Lightweight powder diffraction data visualizer
+
+Depends: kile
+
+Suggests: mantid
+Homepage: http://www.mantidproject.org/Main_Page
+License: ?
+Pkg-Description: ?
+
+Suggests: micromanager
+WNPP: 646853
+Homepage: http://valelab.ucsf.edu/~MM/MMwiki/
+
+Suggests: mmdb
+WNPP: 679982
+Homepage: http://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/mmdb.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/mmdb.git
+Pkg-Description: MMDB is designed to assist developers in working with macromolecular coordinate
+ files. The library handles both PDB and mmCIF format files.
+ .
+ The Library also features an internal binary format, portable between different
+ platforms. This is achieved at uniformity of the Library's interface functions,
+ so that there is no difference in handling different formats.
+ .
+ MMDB provides various high-level tools for working with coordinate files,
+ including reading and writing, orthogonal-fractional transforms, generation of
+ symmetry mates, editing the molecular structure and more.
+ .
+ MMDB is previously written by Eugene Krissinel, and is distributed as a part of
+ the CCP4 suite. This project maintains a current stand-alone version of the library.
+
+Suggests: mmtk
+WNPP: 642586
+Homepage: http://dirac.cnrs-orleans.fr/MMTK/
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/mmtk.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/mmtk.git
+Pkg-Description: The Molecular Modelling Toolkit (MMTK) is an Open Source program library
+ for molecular simulation applications.
+ In addition to providing ready-to-use implementations of standard
+ algorithms, MMTK serves as a code basis that can be easily extended and
+ modified to deal with standard and non-standard problems in molecular
+ simulations.
+ MMTK is a package consisting of various modules, most of them written in
+ Python, and some in C.
+
+Suggests: nmoldyn
+Homepage: http://dirac.cnrs-orleans.fr/plone/software/nmoldyn/
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/nmoldyn.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/nmoldyn.git
+Pkg-Description: ?
+
+Depends: libnexus0, libnexus0-java, libnexus0-python, nexus-tools
+
+Depends: ngraph-gtk
+
+Depends: objcryst-fox
+
+Depends: octave
+
+Suggests: phenix
+Homepage: http://phenix-online.org
+License: ?
+Pkg-Description: automated determination of macromolecular structures
+
+Depends: pyfai
+
+Depends: pymca
+
+Suggests: pynx
+Homepage: http://sourceforge.net/apps/mediawiki/pynx/index.php?title=Main_Page
+License: CeCILL-B
+Pkg-Description: Python tools for Nano-structures Crystallography
+
+Suggests: prestopronto
+Homepage: http://code.google.com/p/prestopronto
+License:GPL3+
+Pkg-Description: Software for analysis of Quick Exafs data
+
+Depends: qtiplot
+
+Depends: qtoctave
+
+Suggests: sastbx
+Homepage: http://sastbx.als.lbl.gov/wiki/index.php/Main_Page
+License: ?
+Pkg-Description: Small angle scattering
+
+Depends: scilab
+
+Depends: sixpack
+
+Depends: spd
+
+Depends: spyder
+
+Suggests: thredds
+WNPP: 650261
+Homepage: http://www.unidata.ucar.edu/software/tds/
+License: MIT
+Pkg-Description: The THREDDS Data Server (TDS) is a web server that
+ provides metadata and data access for scientific datasets, using
+ OPeNDAP, OGC WMS and WCS, HTTP, and other remote data access
+ protocols.
+
+Suggests: threeb
+Homepage: http://www.coxphysics.com/3b
+License: GPL3+
+Pkg-Description: 3B Microscopy Analysis Software. Bayesian analysis of
+ blinking and bleaching, or 3B microscopy, is a method which analyses
+ data in which many overlapping fluorophores undergo bleaching and
+ blinking events, giving the structure at enhanced resolution. By
+ using a Hidden Markov Model (HMM), it allows useful information to be
+ obtained from data that would be impossible to analyse with standard
+ localisation analysis techniques.
+
+Depends: vistrails
+
+Suggests: xrdua
+Homepage: http://sourceforge.net/projects/xrdua/
+License: GPL3+
+Pkg-Description: X-ray Powder Diffraction
+Comment: test if it works with gdl
+
+Depends: libxy-bin
+
+Depends: xmaxima
+
+Suggests: xotoko
+Homepage: http://www.small-angle.ac.uk/small-angle/Software/XOTOKO.html
+License: non-free
+Pkg-Description: XOTOKO is a 1-D interactive data manipulation package
+ for (X,Y) data. The program is has a w ide range of applications even
+ if some of the instructions and options are specific to X-ray
+ applications. OTOKO was originally developed in Hamburg in the 70's
+ by P.Bendall, M.Koch and J.Bordas. The program was transferred to
+ Daresbury in the mid 80's where it was restructured and enhanced by
+ J.Bordas and G.Mant. The program is now available for all major
+ hardware platforms (Sun, HP, DEC, SG, PC Linux) in two varieties
+ otoko and xotoko. The former runs on character based terminals and
+ the latter on X windows based workstations. A PC based version is
+ also available from M.Koch (Hamburg). This manual is based on
+ contributions from the original authors and R.Rule (ICI, Runcorn).
+Comment: binary-only
+
+X-End-Category: Data Analysis
+
+X-Begin-Category: PXSoft
+Comment: PXSoft from ESRF: mainly non-free software, non
+ redistributable code for protein crystallography. Here the url to the
+ pxsoft at the esrf
+ http://www.esrf.eu/UsersAndScience/Experiments/MX/Software/PXSOFT/
+ list of all availables package in the pxsoft directory, which one
+ need to be packaged and wich one did not ? Is it possible for the
+ esrf to tell which of thoses software are required ?, maybe there is
+ very old obsolete soft.
+
+Suggests: 3dna
+Homepage: http://x3dna.org/
+License: non-free
+Pkg-Description: 3DNA is a versatile, integrated software system for
+ the analysis, rebuilding and visualization of three-dimensional
+ nucleic-acid-containing structures. The software is applicable not
+ only to DNA (as the name 3DNA may imply), but also to complicated RNA
+ structures and DNA-protein complexes. In 3DNA, structural analysis
+ and model rebuilding are two sides of the same coin: the description
+ of structure is rigorous and reversible, thus allowing for its exact
+ reconstruction based on the derived parameters. 3DNA automatically
+ detects all non-cannonical base pairs, base triplets and higher-order
+ associations, and coaxially stacked helices; provides a comprehensive
+ collection of fiber models of regular DNA and RNA helices; generates
+ highly effective schematic presentations that reveal key features of
+ nucleic-acid structures; performs undisturbed base mutations, and
+ have facilities for the analysis of molecular dynamics simulation
+ trajectories.
+Comment: binary-only
+
+Suggests: adxv
+Homepage: http://www.scripps.edu/~arvai/adxv.html
+License: non-free
+Pkg-Description: The principal application of adxv is to display
+ protein crystallography X-Ray diffraction data. The data may be
+ displayed as a 2-D image, 3-D wire mesh or as integer pixel
+ values. Data may be saved as either tiff or postscript files. Adxv
+ will display data from most current detectors:
+ .
+ * ADSC ccd
+ * Mar ccd
+ * Mar image plate (old and new format)
+ * Raxis II & IV
+ * Fuji image plate
+ * Crystallographic Binary Format (CBF)
+ * XDS .pck files
+ * European Data Format (EDF)
+ * NUMPY (NPY)
+ * Raw binary 8, 16, 32 & 64 bit integer data
+Comment: binary-only
+
+Suggests: aimless
+Homepage: http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html
+License: ?
+Pkg-Description: This program scales together multiple observations of
+ reflections, and merges multiple observations into an average
+ intensity: it is a successor program to SCALA
+ .
+ Various scaling
+ models can be used. The scale factor is a function of the primary
+ beam direction, either as a smooth function of Phi (the rotation
+ angle ROT), or expressed as BATCH (image) number (deprecated). In
+ addition, the scale may be a function of the secondary beam
+ direction, acting principally as an absorption correction expanded as
+ spherical harmonics. The secondary beam correction is related to the
+ absorption anisotropy correction described by Blessing (Ref Blessing
+ (1995) ).
+ .
+ The merging algorithm analyses the data for outliers, and gives
+ detailed analyses. It generates a weighted mean of the observations
+ of the same reflection, after rejecting the outliers.
+ .
+ The program does several passes through the data:
+ .
+ * initial estimate of the scales
+ * first round scale refinement, using strong data using an I/sigma(I) cutoff
+ * first round of outlier rejection
+ * if both summation and profile-fitted intensity estimates are
+ present (from Mosflm), then the cross-over point is determined
+ between using profile-fitted for weak data and summation for
+ strong data.
+ * first analysis pass to refine the "corrections" to the standard deviation estimates
+ * final round scale refinement, using strong data within limits on the normalised intensity |E|^2
+ * final analysis pass to refine the "corrections" to the standard deviation estimates
+ * final outlier rejections
+ * a final pass to apply scales, analyse agreement & write the output
+ file, usually with merged intensities, but alternatively as file
+ with scaled but unmerged observations, with partials summed and
+ outliers rejected, for each dataset
+ .
+ Anomalous scattering is ignored during the scale determination (I+ &
+ I- observations are treated together), but the merged file always
+ contains I+ & I-, even if the ANOMALOUS OFF command is
+ used. Switching ANOMALOUS ON does affect the statistics and the
+ outlier rejection (qv)
+
+Suggests: albula
+Homepage: http://www.dectris.ch/software_albula.html
+Pkg-Description: Dectris diffraction image viewer and analysis tool
+
+Depends: apbs
+
+Suggests: aplx
+Homepage: http://www.microapl.co.uk/apl
+License: non-free
+Comment: non-free APL language is it really usefull ?
+Pkg-Description: ?
+
+Suggests: atsas
+Homepage: http://www.embl-hamburg.de/biosaxs/software.html
+License: ?
+Comment: which part of the suite is used ?
+Pkg-Description: ?
+
+Depends: autodock
+
+Suggests: autoproc
+Homepage: http://www.globalphasing.com/autoproc
+License: non-free
+Pkg-Description: ?
+
+Depends: openbabel
+
+Suggests: balbes
+Homepage: http://www.ysbl.york.ac.uk/~fei/balbes
+License: ?
+Pkg-Description: ?
+Comment: need ccp4
+
+Suggests: best
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: bioxhit
+Homepage: http://www.bioxhit.org
+License: ?
+Pkg-Description: ?
+
+Suggests: biox-xds
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: bobscript
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: bp3_old
+Homepage: ?
+Comment: old means useless ?
+Pkg-Description: ?
+
+Suggests: c3d
+Homepage: ?
+Comment: file format ?
+Pkg-Description: ?
+
+Suggests: cath
+Homepage: http://www.cathdb.info
+Comment: used ?
+Pkg-Description: ?
+
+Suggests: ccp4
+Homepage: http://www.ccp4.ac.uk
+Pkg-Description: ?
+
+Suggests: cctbx
+WNPP: 679905
+Homepage: http://cctbx.sourceforge.net
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/cctbx.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/cctbx.git
+Pkg-Description: CCTBX is a toolbox for developing crystallographic
+ software. It provides fundamental and advanced methods and algorithms
+ usefull in the scientific fields of crystallography[1], chemistry,
+ physics and biology. It also provides Libraries for general
+ scientific computing. The package is organized as a set of ISO C++
+ classes with Python bindings.
+
+Suggests: chart
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: chimera
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: chooch
+Homepage: ?
+Pkg-Description: ?
+
+Depends: clustalw
+
+Suggests: cn2coot
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: cns_refine
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: cns_solve
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: coot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: crank
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: crystfel
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: das
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dialboxlinuxdriverdialbox_to_remove
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: dino
+
+Suggests: dna
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: domain-finder
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dps2ar
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dviewer
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dyndom3d
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: edna
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: edna2html
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: elves
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: epmr
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: escet
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: evrouter
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: fit2d
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: fobscom
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: gnuplot
+
+Suggests: gramm
+Homepage: http://vakser.bioinformatics.ku.edu/main/resources_gramm.php
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: grasp
+Homepage: http://www.doe-mbi.ucla.edu/Software/GRASP.html
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: ha_ncs
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: harker
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hbplus
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hca
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hkl2map
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hyss
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: imagej
+
+Suggests: imosflm
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: induced-rad-dam
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ipymol
+Homepage: http://www.sbgrid.org/news/newsletters/2007/11
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: ispyb-client
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: default-jdk
+Depends: jmol
+
+Suggests: labelit
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: lam
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: laue
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: liged
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ligplot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ligplus
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: lscale
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: maid
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: main
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: mar345
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: marutils
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: mercury
+Homepage: http://www.ccdc.cam.ac.uk/free_services/mercury
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: mgltools-pmv
+
+Suggests: mlfsom
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: molscriptmolscript-2.1.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: mosflm
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: msi
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: nuccyl
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: nucplot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: onoono80ono90
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pgplot_5.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phaser
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phaser_sad
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phases
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phenix
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pirate
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: plotmtv
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pointless
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: povray
+
+Suggest: powder
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: promotif
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pxpy
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: pymol
+
+Depends: python
+
+Suggests: raddose
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: rasmol
+
+Depends: raster3d
+
+Suggests: refmac
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: replace
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ribbons
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ringer
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: rmerge
+Comment: hugins-tools ?
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: rosetta
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: rtools
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: saxs
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: saxsview
+Homepage: http://saxsview.sourceforge.net
+License: GPL3+
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: scala_mpi
+Comment: scala packages ?
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: scsh-0.5.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: shakerr
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sharp
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: shelx
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sir
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sir2002
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: snb2.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: snow
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: solvesolve-2.08
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: stac-stac2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: strategy
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: surfnet
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: tcltkblt
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: testcase
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: test_exec
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: textal
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: theseus
+
+Suggests: tools
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: tops
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: usf
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: viewhkl
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: wink
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: workflow-ds
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: workflow-executor
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xds
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xiaxia2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xprep
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xrec
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xtalview
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+X-End-Category: PXSoft
Added: projects/pan/trunk/debian-pan/tasks/mx
URL: http://svn.debian.org/wsvn/blends/projects/pan/trunk/debian-pan/tasks/mx?rev=3512&op=file
==============================================================================
--- projects/pan/trunk/debian-pan/tasks/mx (added)
+++ projects/pan/trunk/debian-pan/tasks/mx Wed Jul 18 20:38:48 2012
@@ -1,0 +1,854 @@
+Task: mx
+Description: Macro Molecular diffraction
+ This metapackage will install all MX diffraction softwares.
+Comment: Improve the description
+
+Suggests: coot
+WNPP: 531904
+Homepage:http://biop.ox.ac.uk/coot/
+License: GPLv3 GPLv2+ LGPLv3
+Pkg-Description: Crystallographic Object-Oriented Toolkit
+
+Suggests: edna
+Homepage: http://www.edna-site.org
+License: GPL3+ LGPL3+
+Pkg-Description: Framework to build online data analysis programs
+
+Suggests: nmoldyn
+Homepage: http://dirac.cnrs-orleans.fr/plone/software/nmoldyn/
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/nmoldyn.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/nmoldyn.git
+Pkg-Description: ?
+
+Suggests: phenix
+Homepage: http://phenix-online.org
+License: ?
+Pkg-Description: automated determination of macromolecular structures
+
+Suggests: 3dna
+Homepage: http://x3dna.org/
+License: non-free
+Pkg-Description: 3DNA is a versatile, integrated software system for
+ the analysis, rebuilding and visualization of three-dimensional
+ nucleic-acid-containing structures. The software is applicable not
+ only to DNA (as the name 3DNA may imply), but also to complicated RNA
+ structures and DNA-protein complexes. In 3DNA, structural analysis
+ and model rebuilding are two sides of the same coin: the description
+ of structure is rigorous and reversible, thus allowing for its exact
+ reconstruction based on the derived parameters. 3DNA automatically
+ detects all non-cannonical base pairs, base triplets and higher-order
+ associations, and coaxially stacked helices; provides a comprehensive
+ collection of fiber models of regular DNA and RNA helices; generates
+ highly effective schematic presentations that reveal key features of
+ nucleic-acid structures; performs undisturbed base mutations, and
+ have facilities for the analysis of molecular dynamics simulation
+ trajectories.
+Comment: binary-only
+
+Suggests: adxv
+Homepage: http://www.scripps.edu/~arvai/adxv.html
+License: non-free
+Pkg-Description: The principal application of adxv is to display
+ protein crystallography X-Ray diffraction data. The data may be
+ displayed as a 2-D image, 3-D wire mesh or as integer pixel
+ values. Data may be saved as either tiff or postscript files. Adxv
+ will display data from most current detectors:
+ .
+ * ADSC ccd
+ * Mar ccd
+ * Mar image plate (old and new format)
+ * Raxis II & IV
+ * Fuji image plate
+ * Crystallographic Binary Format (CBF)
+ * XDS .pck files
+ * European Data Format (EDF)
+ * NUMPY (NPY)
+ * Raw binary 8, 16, 32 & 64 bit integer data
+Comment: binary-only
+
+Suggests: aimless
+Homepage: http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html
+License: ?
+Pkg-Description: This program scales together multiple observations of
+ reflections, and merges multiple observations into an average
+ intensity: it is a successor program to SCALA
+ .
+ Various scaling
+ models can be used. The scale factor is a function of the primary
+ beam direction, either as a smooth function of Phi (the rotation
+ angle ROT), or expressed as BATCH (image) number (deprecated). In
+ addition, the scale may be a function of the secondary beam
+ direction, acting principally as an absorption correction expanded as
+ spherical harmonics. The secondary beam correction is related to the
+ absorption anisotropy correction described by Blessing (Ref Blessing
+ (1995) ).
+ .
+ The merging algorithm analyses the data for outliers, and gives
+ detailed analyses. It generates a weighted mean of the observations
+ of the same reflection, after rejecting the outliers.
+ .
+ The program does several passes through the data:
+ .
+ * initial estimate of the scales
+ * first round scale refinement, using strong data using an I/sigma(I) cutoff
+ * first round of outlier rejection
+ * if both summation and profile-fitted intensity estimates are
+ present (from Mosflm), then the cross-over point is determined
+ between using profile-fitted for weak data and summation for
+ strong data.
+ * first analysis pass to refine the "corrections" to the standard deviation estimates
+ * final round scale refinement, using strong data within limits on the normalised intensity |E|^2
+ * final analysis pass to refine the "corrections" to the standard deviation estimates
+ * final outlier rejections
+ * a final pass to apply scales, analyse agreement & write the output
+ file, usually with merged intensities, but alternatively as file
+ with scaled but unmerged observations, with partials summed and
+ outliers rejected, for each dataset
+ .
+ Anomalous scattering is ignored during the scale determination (I+ &
+ I- observations are treated together), but the merged file always
+ contains I+ & I-, even if the ANOMALOUS OFF command is
+ used. Switching ANOMALOUS ON does affect the statistics and the
+ outlier rejection (qv)
+
+Suggests: albula
+Homepage: http://www.dectris.ch/software_albula.html
+Pkg-Description: Dectris diffraction image viewer and analysis tool
+
+Depends: apbs
+
+Suggests: aplx
+Homepage: http://www.microapl.co.uk/apl
+License: non-free
+Comment: non-free APL language is it really usefull ?
+Pkg-Description: ?
+
+Suggests: atsas
+Homepage: http://www.embl-hamburg.de/biosaxs/software.html
+License: ?
+Comment: which part of the suite is used ?
+Pkg-Description: ?
+
+Depends: autodock
+
+Suggests: autoproc
+Homepage: http://www.globalphasing.com/autoproc
+License: non-free
+Pkg-Description: ?
+
+Depends: openbabel
+
+Suggests: balbes
+Homepage: http://www.ysbl.york.ac.uk/~fei/balbes
+License: ?
+Pkg-Description: ?
+Comment: need ccp4
+
+Suggests: best
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: bioxhit
+Homepage: http://www.bioxhit.org
+License: ?
+Pkg-Description: ?
+
+Suggests: biox-xds
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: bobscript
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: bp3_old
+Homepage: ?
+Comment: old means useless ?
+Pkg-Description: ?
+
+Suggests: c3d
+Homepage: ?
+Comment: file format ?
+Pkg-Description: ?
+
+Suggests: cath
+Homepage: http://www.cathdb.info
+Comment: used ?
+Pkg-Description: ?
+
+Suggests: ccp4
+Homepage: http://www.ccp4.ac.uk
+Pkg-Description: ?
+
+Suggests: cctbx
+WNPP: 679905
+Homepage: http://cctbx.sourceforge.net
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/cctbx.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/cctbx.git
+Pkg-Description: CCTBX is a toolbox for developing crystallographic
+ software. It provides fundamental and advanced methods and algorithms
+ usefull in the scientific fields of crystallography[1], chemistry,
+ physics and biology. It also provides Libraries for general
+ scientific computing. The package is organized as a set of ISO C++
+ classes with Python bindings.
+
+Suggests: chart
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: chimera
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: chooch
+Homepage: ?
+Pkg-Description: ?
+
+Depends: clustalw
+
+Suggests: cn2coot
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: cns_refine
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: cns_solve
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: coot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: crank
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: crystfel
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: das
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dialboxlinuxdriverdialbox_to_remove
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: dino
+
+Suggests: dna
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: domain-finder
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dps2ar
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dviewer
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dyndom3d
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: edna
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: edna2html
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: elves
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: epmr
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: escet
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: evrouter
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: fit2d
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: fobscom
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: gnuplot
+
+Suggests: gramm
+Homepage: http://vakser.bioinformatics.ku.edu/main/resources_gramm.php
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: grasp
+Homepage: http://www.doe-mbi.ucla.edu/Software/GRASP.html
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: ha_ncs
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: harker
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hbplus
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hca
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hkl2map
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hyss
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: imagej
+
+Suggests: imosflm
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: induced-rad-dam
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ipymol
+Homepage: http://www.sbgrid.org/news/newsletters/2007/11
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: ispyb-client
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: default-jdk
+Depends: jmol
+
+Suggests: labelit
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: lam
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: laue
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: liged
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ligplot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ligplus
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: lscale
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: maid
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: main
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: mar345
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: marutils
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: mercury
+Homepage: http://www.ccdc.cam.ac.uk/free_services/mercury
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: mgltools-pmv
+
+Suggests: mlfsom
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: molscriptmolscript-2.1.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: mosflm
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: msi
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: nuccyl
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: nucplot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: onoono80ono90
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pgplot_5.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phaser
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phaser_sad
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phases
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phenix
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pirate
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: plotmtv
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pointless
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: povray
+
+Suggest: powder
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: promotif
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pxpy
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: pymol
+
+Depends: python
+
+Suggests: raddose
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: rasmol
+
+Depends: raster3d
+
+Suggests: refmac
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: replace
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ribbons
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ringer
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: rmerge
+Comment: hugins-tools ?
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: rosetta
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: rtools
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: saxs
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: saxsview
+Homepage: http://saxsview.sourceforge.net
+License: GPL3+
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: scala_mpi
+Comment: scala packages ?
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: scsh-0.5.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: shakerr
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sharp
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: shelx
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sir
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sir2002
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: snb2.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: snow
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: solvesolve-2.08
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: stac-stac2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: strategy
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: surfnet
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: tcltkblt
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: testcase
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: test_exec
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: textal
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: theseus
+
+Suggests: tools
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: tops
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: usf
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: viewhkl
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: wink
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: workflow-ds
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: workflow-executor
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xds
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xiaxia2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xprep
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xrec
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xtalview
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
Added: projects/pan/trunk/debian-pan/tasks/small-angle-scattering
URL: http://svn.debian.org/wsvn/blends/projects/pan/trunk/debian-pan/tasks/small-angle-scattering?rev=3512&op=file
==============================================================================
--- projects/pan/trunk/debian-pan/tasks/small-angle-scattering (added)
+++ projects/pan/trunk/debian-pan/tasks/small-angle-scattering Wed Jul 18 20:38:48 2012
@@ -1,0 +1,1150 @@
+Task: unsorted
+Description: PAN Debian all packages
+ This metapackage will install all PAN Blend packages. This is
+ a temporary package until we sorted all packages into the right
+ categories.
+
+X-Begin-Category: Synchrotron machine
+
+Suggests: spectra
+Homepage: http://radiant.harima.riken.go.jp/spectra/
+License: ?
+Pkg-Description: calculate optical properties of synchrotron radiation
+ emitted from bending magnets, wigglers.
+
+Comment: http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/software.shtml
+
+X-End-Category: Synchrotron machine
+
+X-Begin-Category: Data acquisition
+
+Depends: ghkl
+
+Suggests: lima
+Homepage: http://lima.blissgarden.org/index.html
+License: GPL3+
+Pkg-Description: Library for Image Acquisition
+
+Suggests: opengda
+Homepage: http://www.opengda.org
+License: ?
+Pkg-Description: ?
+
+Depends: tango-db, tango-starter, tango-accesscontrol
+
+Suggests: tomographie-preexperiment-data-collector
+Homepage: https://bitbucket.org/Ingvord/tomography-preexperiment-data-collector/wiki/Home
+License: GPL2+
+Pkg-Description: gather all information from the user that can be
+ provided prior to the tomography experiment.
+
+X-End-Category: Data acquisition
+
+X-Begin-Category: Data Analysis
+
+Suggests: bsl
+Homepage: http://www.small-angle.ac.uk/dms/small-angle/linux/bsl-tar/bsl.tar.gz
+License: ?
+Pkg-Description: small angle scattering
+Comment: binary only
+
+Suggests: cdma
+Homepage: http://code.google.com/p/cdma/
+License: ?
+Pkg-Description: Common Data Model API
+
+Suggests: comete
+Homepage: http://sourceforge.net/apps/trac/comete/
+License: ?
+Pkg-Description: widget toolkit
+
+Suggests: coot
+WNPP: 531904
+Homepage:http://biop.ox.ac.uk/coot/
+License: GPLv3 GPLv2+ LGPLv3
+Pkg-Description: Crystallographic Object-Oriented Toolkit
+
+Suggests: cpl
+WNPP: 641628
+Homepage: http://www.eso.org/sci/software/cpl/
+License: GPL2+
+Pkg-Description: ESO Common Pipeline Library
+
+Suggests: dawn
+Homepage: http://www.dawb.org/
+License: ?
+Pkg-Description: general purpose data acquisition and processing
+
+Suggests: diffraction-ring-profiler
+Homepage: http://code.google.com/p/diffraction-ring-profiler/
+License: GPL3+
+Pkg-Description: A program for extracting electron diffraction ring pattern profiles
+
+Suggests: disp
+Homepage: http://code.google.com/p/disp/
+License: GPL2+
+Pkg-Description: Diffraction Image Statistics Package for R
+
+Suggests: edna
+Homepage: http://www.edna-site.org
+License: GPL3+ LGPL3+
+Pkg-Description: Framework to build online data analysis programs
+
+Depends: python-fabio
+
+Suggests: fit2d
+Homepage: http://www.esrf.eu/computing/scientific/FIT2D/
+License: ?
+Comment: binary only
+Pkg-Description: ?
+
+Suggests: fitgisaxs
+Homepage: http://lmp.sp2mi.univ-poitiers.fr/en/index.php?option=com_content&task=view&id=124&Itemid=42
+License: ?
+Comment: IgorPro software
+Pkg-Description: ?
+
+Depends: fityk
+
+Suggests: freeart
+Homepage: https://forge.epn-campus.eu/projects/freeart
+License: LGPL
+Pkg-Description: SART reconstruction algorithm
+
+Suggests: fullprof
+Homepage: http://www.ill.eu/sites/fullprof
+License: ?
+Comment: binary only
+Pkg-Description: ?
+
+Depends: g3data
+
+Depends: gnuplot
+
+Suggests: graphlab
+Homepage: http://graphlab.org/
+License: Apache License
+Pkg-Description: A New Parallel Framework for Machine Learning
+
+Depends: python-guidata
+
+Depends: python-guiqwt
+
+Suggests: gsas
+Homepage: ftp://ftp.ncnr.nist.gov/pub/cryst/gsas/LINUX_gsas+expgui.tar.gz
+License: ?
+Pkg-Description: ?
+
+Suggests: gumtree
+Homepage: http://docs.codehaus.org/display/GUMTREE/Home
+License: ?
+Pkg-Description: general purpose data acq and processing
+
+Suggests: hawk
+Homepage: http://xray.bmc.uu.se/hawk/
+License: ?
+Pkg-Description: diffraction pattern reconstruction
+
+Depends: ifeffit
+
+Depends: imagej
+
+Suggests: imagej-pluggins-tomo
+Homepage: https://www.cells.es/Members/cpascual/files/public/scisoft_files/imagej-tomo-plugins/at_download
+License: ?
+Pkg-Description: ?
+
+Suggests: isgisaxs
+Homepage: http://ln-www.insp.upmc.fr/axe4/Oxydes/IsGISAXS/isgisaxs.htm
+License: GPL3+
+Pkg-Description: gisaxs -- diffraction
+
+Suggests: jpowder
+Homepage: http://www.jpowder.org/
+License: GPL3+
+Pkg-Description: Lightweight powder diffraction data visualizer
+
+Depends: kile
+
+Suggests: mantid
+Homepage: http://www.mantidproject.org/Main_Page
+License: ?
+Pkg-Description: ?
+
+Suggests: micromanager
+WNPP: 646853
+Homepage: http://valelab.ucsf.edu/~MM/MMwiki/
+
+Suggests: mmdb
+WNPP: 679982
+Homepage: http://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/mmdb.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/mmdb.git
+Pkg-Description: MMDB is designed to assist developers in working with macromolecular coordinate
+ files. The library handles both PDB and mmCIF format files.
+ .
+ The Library also features an internal binary format, portable between different
+ platforms. This is achieved at uniformity of the Library's interface functions,
+ so that there is no difference in handling different formats.
+ .
+ MMDB provides various high-level tools for working with coordinate files,
+ including reading and writing, orthogonal-fractional transforms, generation of
+ symmetry mates, editing the molecular structure and more.
+ .
+ MMDB is previously written by Eugene Krissinel, and is distributed as a part of
+ the CCP4 suite. This project maintains a current stand-alone version of the library.
+
+Suggests: mmtk
+WNPP: 642586
+Homepage: http://dirac.cnrs-orleans.fr/MMTK/
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/mmtk.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/mmtk.git
+Pkg-Description: The Molecular Modelling Toolkit (MMTK) is an Open Source program library
+ for molecular simulation applications.
+ In addition to providing ready-to-use implementations of standard
+ algorithms, MMTK serves as a code basis that can be easily extended and
+ modified to deal with standard and non-standard problems in molecular
+ simulations.
+ MMTK is a package consisting of various modules, most of them written in
+ Python, and some in C.
+
+Suggests: nmoldyn
+Homepage: http://dirac.cnrs-orleans.fr/plone/software/nmoldyn/
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/nmoldyn.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/nmoldyn.git
+Pkg-Description: ?
+
+Depends: libnexus0, libnexus0-java, libnexus0-python, nexus-tools
+
+Depends: ngraph-gtk
+
+Depends: objcryst-fox
+
+Depends: octave
+
+Suggests: phenix
+Homepage: http://phenix-online.org
+License: ?
+Pkg-Description: automated determination of macromolecular structures
+
+Depends: pyfai
+
+Depends: pymca
+
+Suggests: pynx
+Homepage: http://sourceforge.net/apps/mediawiki/pynx/index.php?title=Main_Page
+License: CeCILL-B
+Pkg-Description: Python tools for Nano-structures Crystallography
+
+Suggests: prestopronto
+Homepage: http://code.google.com/p/prestopronto
+License:GPL3+
+Pkg-Description: Software for analysis of Quick Exafs data
+
+Depends: qtiplot
+
+Depends: qtoctave
+
+Suggests: sastbx
+Homepage: http://sastbx.als.lbl.gov/wiki/index.php/Main_Page
+License: ?
+Pkg-Description: Small angle scattering
+
+Depends: scilab
+
+Depends: sixpack
+
+Depends: spd
+
+Depends: spyder
+
+Suggests: thredds
+WNPP: 650261
+Homepage: http://www.unidata.ucar.edu/software/tds/
+License: MIT
+Pkg-Description: The THREDDS Data Server (TDS) is a web server that
+ provides metadata and data access for scientific datasets, using
+ OPeNDAP, OGC WMS and WCS, HTTP, and other remote data access
+ protocols.
+
+Suggests: threeb
+Homepage: http://www.coxphysics.com/3b
+License: GPL3+
+Pkg-Description: 3B Microscopy Analysis Software. Bayesian analysis of
+ blinking and bleaching, or 3B microscopy, is a method which analyses
+ data in which many overlapping fluorophores undergo bleaching and
+ blinking events, giving the structure at enhanced resolution. By
+ using a Hidden Markov Model (HMM), it allows useful information to be
+ obtained from data that would be impossible to analyse with standard
+ localisation analysis techniques.
+
+Depends: vistrails
+
+Suggests: xrdua
+Homepage: http://sourceforge.net/projects/xrdua/
+License: GPL3+
+Pkg-Description: X-ray Powder Diffraction
+Comment: test if it works with gdl
+
+Depends: libxy-bin
+
+Depends: xmaxima
+
+Suggests: xotoko
+Homepage: http://www.small-angle.ac.uk/small-angle/Software/XOTOKO.html
+License: non-free
+Pkg-Description: XOTOKO is a 1-D interactive data manipulation package
+ for (X,Y) data. The program is has a w ide range of applications even
+ if some of the instructions and options are specific to X-ray
+ applications. OTOKO was originally developed in Hamburg in the 70's
+ by P.Bendall, M.Koch and J.Bordas. The program was transferred to
+ Daresbury in the mid 80's where it was restructured and enhanced by
+ J.Bordas and G.Mant. The program is now available for all major
+ hardware platforms (Sun, HP, DEC, SG, PC Linux) in two varieties
+ otoko and xotoko. The former runs on character based terminals and
+ the latter on X windows based workstations. A PC based version is
+ also available from M.Koch (Hamburg). This manual is based on
+ contributions from the original authors and R.Rule (ICI, Runcorn).
+Comment: binary-only
+
+X-End-Category: Data Analysis
+
+X-Begin-Category: PXSoft
+Comment: PXSoft from ESRF: mainly non-free software, non
+ redistributable code for protein crystallography. Here the url to the
+ pxsoft at the esrf
+ http://www.esrf.eu/UsersAndScience/Experiments/MX/Software/PXSOFT/
+ list of all availables package in the pxsoft directory, which one
+ need to be packaged and wich one did not ? Is it possible for the
+ esrf to tell which of thoses software are required ?, maybe there is
+ very old obsolete soft.
+
+Suggests: 3dna
+Homepage: http://x3dna.org/
+License: non-free
+Pkg-Description: 3DNA is a versatile, integrated software system for
+ the analysis, rebuilding and visualization of three-dimensional
+ nucleic-acid-containing structures. The software is applicable not
+ only to DNA (as the name 3DNA may imply), but also to complicated RNA
+ structures and DNA-protein complexes. In 3DNA, structural analysis
+ and model rebuilding are two sides of the same coin: the description
+ of structure is rigorous and reversible, thus allowing for its exact
+ reconstruction based on the derived parameters. 3DNA automatically
+ detects all non-cannonical base pairs, base triplets and higher-order
+ associations, and coaxially stacked helices; provides a comprehensive
+ collection of fiber models of regular DNA and RNA helices; generates
+ highly effective schematic presentations that reveal key features of
+ nucleic-acid structures; performs undisturbed base mutations, and
+ have facilities for the analysis of molecular dynamics simulation
+ trajectories.
+Comment: binary-only
+
+Suggests: adxv
+Homepage: http://www.scripps.edu/~arvai/adxv.html
+License: non-free
+Pkg-Description: The principal application of adxv is to display
+ protein crystallography X-Ray diffraction data. The data may be
+ displayed as a 2-D image, 3-D wire mesh or as integer pixel
+ values. Data may be saved as either tiff or postscript files. Adxv
+ will display data from most current detectors:
+ .
+ * ADSC ccd
+ * Mar ccd
+ * Mar image plate (old and new format)
+ * Raxis II & IV
+ * Fuji image plate
+ * Crystallographic Binary Format (CBF)
+ * XDS .pck files
+ * European Data Format (EDF)
+ * NUMPY (NPY)
+ * Raw binary 8, 16, 32 & 64 bit integer data
+Comment: binary-only
+
+Suggests: aimless
+Homepage: http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html
+License: ?
+Pkg-Description: This program scales together multiple observations of
+ reflections, and merges multiple observations into an average
+ intensity: it is a successor program to SCALA
+ .
+ Various scaling
+ models can be used. The scale factor is a function of the primary
+ beam direction, either as a smooth function of Phi (the rotation
+ angle ROT), or expressed as BATCH (image) number (deprecated). In
+ addition, the scale may be a function of the secondary beam
+ direction, acting principally as an absorption correction expanded as
+ spherical harmonics. The secondary beam correction is related to the
+ absorption anisotropy correction described by Blessing (Ref Blessing
+ (1995) ).
+ .
+ The merging algorithm analyses the data for outliers, and gives
+ detailed analyses. It generates a weighted mean of the observations
+ of the same reflection, after rejecting the outliers.
+ .
+ The program does several passes through the data:
+ .
+ * initial estimate of the scales
+ * first round scale refinement, using strong data using an I/sigma(I) cutoff
+ * first round of outlier rejection
+ * if both summation and profile-fitted intensity estimates are
+ present (from Mosflm), then the cross-over point is determined
+ between using profile-fitted for weak data and summation for
+ strong data.
+ * first analysis pass to refine the "corrections" to the standard deviation estimates
+ * final round scale refinement, using strong data within limits on the normalised intensity |E|^2
+ * final analysis pass to refine the "corrections" to the standard deviation estimates
+ * final outlier rejections
+ * a final pass to apply scales, analyse agreement & write the output
+ file, usually with merged intensities, but alternatively as file
+ with scaled but unmerged observations, with partials summed and
+ outliers rejected, for each dataset
+ .
+ Anomalous scattering is ignored during the scale determination (I+ &
+ I- observations are treated together), but the merged file always
+ contains I+ & I-, even if the ANOMALOUS OFF command is
+ used. Switching ANOMALOUS ON does affect the statistics and the
+ outlier rejection (qv)
+
+Suggests: albula
+Homepage: http://www.dectris.ch/software_albula.html
+Pkg-Description: Dectris diffraction image viewer and analysis tool
+
+Depends: apbs
+
+Suggests: aplx
+Homepage: http://www.microapl.co.uk/apl
+License: non-free
+Comment: non-free APL language is it really usefull ?
+Pkg-Description: ?
+
+Suggests: atsas
+Homepage: http://www.embl-hamburg.de/biosaxs/software.html
+License: ?
+Comment: which part of the suite is used ?
+Pkg-Description: ?
+
+Depends: autodock
+
+Suggests: autoproc
+Homepage: http://www.globalphasing.com/autoproc
+License: non-free
+Pkg-Description: ?
+
+Depends: openbabel
+
+Suggests: balbes
+Homepage: http://www.ysbl.york.ac.uk/~fei/balbes
+License: ?
+Pkg-Description: ?
+Comment: need ccp4
+
+Suggests: best
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: bioxhit
+Homepage: http://www.bioxhit.org
+License: ?
+Pkg-Description: ?
+
+Suggests: biox-xds
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: bobscript
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: bp3_old
+Homepage: ?
+Comment: old means useless ?
+Pkg-Description: ?
+
+Suggests: c3d
+Homepage: ?
+Comment: file format ?
+Pkg-Description: ?
+
+Suggests: cath
+Homepage: http://www.cathdb.info
+Comment: used ?
+Pkg-Description: ?
+
+Suggests: ccp4
+Homepage: http://www.ccp4.ac.uk
+Pkg-Description: ?
+
+Suggests: cctbx
+WNPP: 679905
+Homepage: http://cctbx.sourceforge.net
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/cctbx.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/cctbx.git
+Pkg-Description: CCTBX is a toolbox for developing crystallographic
+ software. It provides fundamental and advanced methods and algorithms
+ usefull in the scientific fields of crystallography[1], chemistry,
+ physics and biology. It also provides Libraries for general
+ scientific computing. The package is organized as a set of ISO C++
+ classes with Python bindings.
+
+Suggests: chart
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: chimera
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: chooch
+Homepage: ?
+Pkg-Description: ?
+
+Depends: clustalw
+
+Suggests: cn2coot
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: cns_refine
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: cns_solve
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: coot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: crank
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: crystfel
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: das
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dialboxlinuxdriverdialbox_to_remove
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: dino
+
+Suggests: dna
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: domain-finder
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dps2ar
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dviewer
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dyndom3d
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: edna
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: edna2html
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: elves
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: epmr
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: escet
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: evrouter
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: fit2d
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: fobscom
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: gnuplot
+
+Suggests: gramm
+Homepage: http://vakser.bioinformatics.ku.edu/main/resources_gramm.php
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: grasp
+Homepage: http://www.doe-mbi.ucla.edu/Software/GRASP.html
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: ha_ncs
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: harker
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hbplus
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hca
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hkl2map
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hyss
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: imagej
+
+Suggests: imosflm
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: induced-rad-dam
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ipymol
+Homepage: http://www.sbgrid.org/news/newsletters/2007/11
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: ispyb-client
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: default-jdk
+Depends: jmol
+
+Suggests: labelit
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: lam
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: laue
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: liged
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ligplot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ligplus
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: lscale
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: maid
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: main
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: mar345
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: marutils
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: mercury
+Homepage: http://www.ccdc.cam.ac.uk/free_services/mercury
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: mgltools-pmv
+
+Suggests: mlfsom
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: molscriptmolscript-2.1.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: mosflm
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: msi
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: nuccyl
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: nucplot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: onoono80ono90
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pgplot_5.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phaser
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phaser_sad
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phases
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phenix
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pirate
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: plotmtv
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pointless
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: povray
+
+Suggest: powder
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: promotif
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pxpy
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: pymol
+
+Depends: python
+
+Suggests: raddose
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: rasmol
+
+Depends: raster3d
+
+Suggests: refmac
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: replace
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ribbons
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ringer
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: rmerge
+Comment: hugins-tools ?
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: rosetta
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: rtools
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: saxs
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: saxsview
+Homepage: http://saxsview.sourceforge.net
+License: GPL3+
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: scala_mpi
+Comment: scala packages ?
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: scsh-0.5.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: shakerr
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sharp
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: shelx
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sir
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sir2002
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: snb2.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: snow
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: solvesolve-2.08
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: stac-stac2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: strategy
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: surfnet
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: tcltkblt
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: testcase
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: test_exec
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: textal
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: theseus
+
+Suggests: tools
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: tops
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: usf
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: viewhkl
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: wink
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: workflow-ds
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: workflow-executor
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xds
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xiaxia2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xprep
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xrec
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xtalview
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+X-End-Category: PXSoft
Added: projects/pan/trunk/debian-pan/tasks/tomography
URL: http://svn.debian.org/wsvn/blends/projects/pan/trunk/debian-pan/tasks/tomography?rev=3512&op=file
==============================================================================
--- projects/pan/trunk/debian-pan/tasks/tomography (added)
+++ projects/pan/trunk/debian-pan/tasks/tomography Wed Jul 18 20:38:48 2012
@@ -1,0 +1,1150 @@
+Task: unsorted
+Description: PAN Debian all packages
+ This metapackage will install all PAN Blend packages. This is
+ a temporary package until we sorted all packages into the right
+ categories.
+
+X-Begin-Category: Synchrotron machine
+
+Suggests: spectra
+Homepage: http://radiant.harima.riken.go.jp/spectra/
+License: ?
+Pkg-Description: calculate optical properties of synchrotron radiation
+ emitted from bending magnets, wigglers.
+
+Comment: http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/software.shtml
+
+X-End-Category: Synchrotron machine
+
+X-Begin-Category: Data acquisition
+
+Depends: ghkl
+
+Suggests: lima
+Homepage: http://lima.blissgarden.org/index.html
+License: GPL3+
+Pkg-Description: Library for Image Acquisition
+
+Suggests: opengda
+Homepage: http://www.opengda.org
+License: ?
+Pkg-Description: ?
+
+Depends: tango-db, tango-starter, tango-accesscontrol
+
+Suggests: tomographie-preexperiment-data-collector
+Homepage: https://bitbucket.org/Ingvord/tomography-preexperiment-data-collector/wiki/Home
+License: GPL2+
+Pkg-Description: gather all information from the user that can be
+ provided prior to the tomography experiment.
+
+X-End-Category: Data acquisition
+
+X-Begin-Category: Data Analysis
+
+Suggests: bsl
+Homepage: http://www.small-angle.ac.uk/dms/small-angle/linux/bsl-tar/bsl.tar.gz
+License: ?
+Pkg-Description: small angle scattering
+Comment: binary only
+
+Suggests: cdma
+Homepage: http://code.google.com/p/cdma/
+License: ?
+Pkg-Description: Common Data Model API
+
+Suggests: comete
+Homepage: http://sourceforge.net/apps/trac/comete/
+License: ?
+Pkg-Description: widget toolkit
+
+Suggests: coot
+WNPP: 531904
+Homepage:http://biop.ox.ac.uk/coot/
+License: GPLv3 GPLv2+ LGPLv3
+Pkg-Description: Crystallographic Object-Oriented Toolkit
+
+Suggests: cpl
+WNPP: 641628
+Homepage: http://www.eso.org/sci/software/cpl/
+License: GPL2+
+Pkg-Description: ESO Common Pipeline Library
+
+Suggests: dawn
+Homepage: http://www.dawb.org/
+License: ?
+Pkg-Description: general purpose data acquisition and processing
+
+Suggests: diffraction-ring-profiler
+Homepage: http://code.google.com/p/diffraction-ring-profiler/
+License: GPL3+
+Pkg-Description: A program for extracting electron diffraction ring pattern profiles
+
+Suggests: disp
+Homepage: http://code.google.com/p/disp/
+License: GPL2+
+Pkg-Description: Diffraction Image Statistics Package for R
+
+Suggests: edna
+Homepage: http://www.edna-site.org
+License: GPL3+ LGPL3+
+Pkg-Description: Framework to build online data analysis programs
+
+Depends: python-fabio
+
+Suggests: fit2d
+Homepage: http://www.esrf.eu/computing/scientific/FIT2D/
+License: ?
+Comment: binary only
+Pkg-Description: ?
+
+Suggests: fitgisaxs
+Homepage: http://lmp.sp2mi.univ-poitiers.fr/en/index.php?option=com_content&task=view&id=124&Itemid=42
+License: ?
+Comment: IgorPro software
+Pkg-Description: ?
+
+Depends: fityk
+
+Suggests: freeart
+Homepage: https://forge.epn-campus.eu/projects/freeart
+License: LGPL
+Pkg-Description: SART reconstruction algorithm
+
+Suggests: fullprof
+Homepage: http://www.ill.eu/sites/fullprof
+License: ?
+Comment: binary only
+Pkg-Description: ?
+
+Depends: g3data
+
+Depends: gnuplot
+
+Suggests: graphlab
+Homepage: http://graphlab.org/
+License: Apache License
+Pkg-Description: A New Parallel Framework for Machine Learning
+
+Depends: python-guidata
+
+Depends: python-guiqwt
+
+Suggests: gsas
+Homepage: ftp://ftp.ncnr.nist.gov/pub/cryst/gsas/LINUX_gsas+expgui.tar.gz
+License: ?
+Pkg-Description: ?
+
+Suggests: gumtree
+Homepage: http://docs.codehaus.org/display/GUMTREE/Home
+License: ?
+Pkg-Description: general purpose data acq and processing
+
+Suggests: hawk
+Homepage: http://xray.bmc.uu.se/hawk/
+License: ?
+Pkg-Description: diffraction pattern reconstruction
+
+Depends: ifeffit
+
+Depends: imagej
+
+Suggests: imagej-pluggins-tomo
+Homepage: https://www.cells.es/Members/cpascual/files/public/scisoft_files/imagej-tomo-plugins/at_download
+License: ?
+Pkg-Description: ?
+
+Suggests: isgisaxs
+Homepage: http://ln-www.insp.upmc.fr/axe4/Oxydes/IsGISAXS/isgisaxs.htm
+License: GPL3+
+Pkg-Description: gisaxs -- diffraction
+
+Suggests: jpowder
+Homepage: http://www.jpowder.org/
+License: GPL3+
+Pkg-Description: Lightweight powder diffraction data visualizer
+
+Depends: kile
+
+Suggests: mantid
+Homepage: http://www.mantidproject.org/Main_Page
+License: ?
+Pkg-Description: ?
+
+Suggests: micromanager
+WNPP: 646853
+Homepage: http://valelab.ucsf.edu/~MM/MMwiki/
+
+Suggests: mmdb
+WNPP: 679982
+Homepage: http://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/mmdb.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/mmdb.git
+Pkg-Description: MMDB is designed to assist developers in working with macromolecular coordinate
+ files. The library handles both PDB and mmCIF format files.
+ .
+ The Library also features an internal binary format, portable between different
+ platforms. This is achieved at uniformity of the Library's interface functions,
+ so that there is no difference in handling different formats.
+ .
+ MMDB provides various high-level tools for working with coordinate files,
+ including reading and writing, orthogonal-fractional transforms, generation of
+ symmetry mates, editing the molecular structure and more.
+ .
+ MMDB is previously written by Eugene Krissinel, and is distributed as a part of
+ the CCP4 suite. This project maintains a current stand-alone version of the library.
+
+Suggests: mmtk
+WNPP: 642586
+Homepage: http://dirac.cnrs-orleans.fr/MMTK/
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/mmtk.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/mmtk.git
+Pkg-Description: The Molecular Modelling Toolkit (MMTK) is an Open Source program library
+ for molecular simulation applications.
+ In addition to providing ready-to-use implementations of standard
+ algorithms, MMTK serves as a code basis that can be easily extended and
+ modified to deal with standard and non-standard problems in molecular
+ simulations.
+ MMTK is a package consisting of various modules, most of them written in
+ Python, and some in C.
+
+Suggests: nmoldyn
+Homepage: http://dirac.cnrs-orleans.fr/plone/software/nmoldyn/
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/nmoldyn.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/nmoldyn.git
+Pkg-Description: ?
+
+Depends: libnexus0, libnexus0-java, libnexus0-python, nexus-tools
+
+Depends: ngraph-gtk
+
+Depends: objcryst-fox
+
+Depends: octave
+
+Suggests: phenix
+Homepage: http://phenix-online.org
+License: ?
+Pkg-Description: automated determination of macromolecular structures
+
+Depends: pyfai
+
+Depends: pymca
+
+Suggests: pynx
+Homepage: http://sourceforge.net/apps/mediawiki/pynx/index.php?title=Main_Page
+License: CeCILL-B
+Pkg-Description: Python tools for Nano-structures Crystallography
+
+Suggests: prestopronto
+Homepage: http://code.google.com/p/prestopronto
+License:GPL3+
+Pkg-Description: Software for analysis of Quick Exafs data
+
+Depends: qtiplot
+
+Depends: qtoctave
+
+Suggests: sastbx
+Homepage: http://sastbx.als.lbl.gov/wiki/index.php/Main_Page
+License: ?
+Pkg-Description: Small angle scattering
+
+Depends: scilab
+
+Depends: sixpack
+
+Depends: spd
+
+Depends: spyder
+
+Suggests: thredds
+WNPP: 650261
+Homepage: http://www.unidata.ucar.edu/software/tds/
+License: MIT
+Pkg-Description: The THREDDS Data Server (TDS) is a web server that
+ provides metadata and data access for scientific datasets, using
+ OPeNDAP, OGC WMS and WCS, HTTP, and other remote data access
+ protocols.
+
+Suggests: threeb
+Homepage: http://www.coxphysics.com/3b
+License: GPL3+
+Pkg-Description: 3B Microscopy Analysis Software. Bayesian analysis of
+ blinking and bleaching, or 3B microscopy, is a method which analyses
+ data in which many overlapping fluorophores undergo bleaching and
+ blinking events, giving the structure at enhanced resolution. By
+ using a Hidden Markov Model (HMM), it allows useful information to be
+ obtained from data that would be impossible to analyse with standard
+ localisation analysis techniques.
+
+Depends: vistrails
+
+Suggests: xrdua
+Homepage: http://sourceforge.net/projects/xrdua/
+License: GPL3+
+Pkg-Description: X-ray Powder Diffraction
+Comment: test if it works with gdl
+
+Depends: libxy-bin
+
+Depends: xmaxima
+
+Suggests: xotoko
+Homepage: http://www.small-angle.ac.uk/small-angle/Software/XOTOKO.html
+License: non-free
+Pkg-Description: XOTOKO is a 1-D interactive data manipulation package
+ for (X,Y) data. The program is has a w ide range of applications even
+ if some of the instructions and options are specific to X-ray
+ applications. OTOKO was originally developed in Hamburg in the 70's
+ by P.Bendall, M.Koch and J.Bordas. The program was transferred to
+ Daresbury in the mid 80's where it was restructured and enhanced by
+ J.Bordas and G.Mant. The program is now available for all major
+ hardware platforms (Sun, HP, DEC, SG, PC Linux) in two varieties
+ otoko and xotoko. The former runs on character based terminals and
+ the latter on X windows based workstations. A PC based version is
+ also available from M.Koch (Hamburg). This manual is based on
+ contributions from the original authors and R.Rule (ICI, Runcorn).
+Comment: binary-only
+
+X-End-Category: Data Analysis
+
+X-Begin-Category: PXSoft
+Comment: PXSoft from ESRF: mainly non-free software, non
+ redistributable code for protein crystallography. Here the url to the
+ pxsoft at the esrf
+ http://www.esrf.eu/UsersAndScience/Experiments/MX/Software/PXSOFT/
+ list of all availables package in the pxsoft directory, which one
+ need to be packaged and wich one did not ? Is it possible for the
+ esrf to tell which of thoses software are required ?, maybe there is
+ very old obsolete soft.
+
+Suggests: 3dna
+Homepage: http://x3dna.org/
+License: non-free
+Pkg-Description: 3DNA is a versatile, integrated software system for
+ the analysis, rebuilding and visualization of three-dimensional
+ nucleic-acid-containing structures. The software is applicable not
+ only to DNA (as the name 3DNA may imply), but also to complicated RNA
+ structures and DNA-protein complexes. In 3DNA, structural analysis
+ and model rebuilding are two sides of the same coin: the description
+ of structure is rigorous and reversible, thus allowing for its exact
+ reconstruction based on the derived parameters. 3DNA automatically
+ detects all non-cannonical base pairs, base triplets and higher-order
+ associations, and coaxially stacked helices; provides a comprehensive
+ collection of fiber models of regular DNA and RNA helices; generates
+ highly effective schematic presentations that reveal key features of
+ nucleic-acid structures; performs undisturbed base mutations, and
+ have facilities for the analysis of molecular dynamics simulation
+ trajectories.
+Comment: binary-only
+
+Suggests: adxv
+Homepage: http://www.scripps.edu/~arvai/adxv.html
+License: non-free
+Pkg-Description: The principal application of adxv is to display
+ protein crystallography X-Ray diffraction data. The data may be
+ displayed as a 2-D image, 3-D wire mesh or as integer pixel
+ values. Data may be saved as either tiff or postscript files. Adxv
+ will display data from most current detectors:
+ .
+ * ADSC ccd
+ * Mar ccd
+ * Mar image plate (old and new format)
+ * Raxis II & IV
+ * Fuji image plate
+ * Crystallographic Binary Format (CBF)
+ * XDS .pck files
+ * European Data Format (EDF)
+ * NUMPY (NPY)
+ * Raw binary 8, 16, 32 & 64 bit integer data
+Comment: binary-only
+
+Suggests: aimless
+Homepage: http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html
+License: ?
+Pkg-Description: This program scales together multiple observations of
+ reflections, and merges multiple observations into an average
+ intensity: it is a successor program to SCALA
+ .
+ Various scaling
+ models can be used. The scale factor is a function of the primary
+ beam direction, either as a smooth function of Phi (the rotation
+ angle ROT), or expressed as BATCH (image) number (deprecated). In
+ addition, the scale may be a function of the secondary beam
+ direction, acting principally as an absorption correction expanded as
+ spherical harmonics. The secondary beam correction is related to the
+ absorption anisotropy correction described by Blessing (Ref Blessing
+ (1995) ).
+ .
+ The merging algorithm analyses the data for outliers, and gives
+ detailed analyses. It generates a weighted mean of the observations
+ of the same reflection, after rejecting the outliers.
+ .
+ The program does several passes through the data:
+ .
+ * initial estimate of the scales
+ * first round scale refinement, using strong data using an I/sigma(I) cutoff
+ * first round of outlier rejection
+ * if both summation and profile-fitted intensity estimates are
+ present (from Mosflm), then the cross-over point is determined
+ between using profile-fitted for weak data and summation for
+ strong data.
+ * first analysis pass to refine the "corrections" to the standard deviation estimates
+ * final round scale refinement, using strong data within limits on the normalised intensity |E|^2
+ * final analysis pass to refine the "corrections" to the standard deviation estimates
+ * final outlier rejections
+ * a final pass to apply scales, analyse agreement & write the output
+ file, usually with merged intensities, but alternatively as file
+ with scaled but unmerged observations, with partials summed and
+ outliers rejected, for each dataset
+ .
+ Anomalous scattering is ignored during the scale determination (I+ &
+ I- observations are treated together), but the merged file always
+ contains I+ & I-, even if the ANOMALOUS OFF command is
+ used. Switching ANOMALOUS ON does affect the statistics and the
+ outlier rejection (qv)
+
+Suggests: albula
+Homepage: http://www.dectris.ch/software_albula.html
+Pkg-Description: Dectris diffraction image viewer and analysis tool
+
+Depends: apbs
+
+Suggests: aplx
+Homepage: http://www.microapl.co.uk/apl
+License: non-free
+Comment: non-free APL language is it really usefull ?
+Pkg-Description: ?
+
+Suggests: atsas
+Homepage: http://www.embl-hamburg.de/biosaxs/software.html
+License: ?
+Comment: which part of the suite is used ?
+Pkg-Description: ?
+
+Depends: autodock
+
+Suggests: autoproc
+Homepage: http://www.globalphasing.com/autoproc
+License: non-free
+Pkg-Description: ?
+
+Depends: openbabel
+
+Suggests: balbes
+Homepage: http://www.ysbl.york.ac.uk/~fei/balbes
+License: ?
+Pkg-Description: ?
+Comment: need ccp4
+
+Suggests: best
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: bioxhit
+Homepage: http://www.bioxhit.org
+License: ?
+Pkg-Description: ?
+
+Suggests: biox-xds
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: bobscript
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: bp3_old
+Homepage: ?
+Comment: old means useless ?
+Pkg-Description: ?
+
+Suggests: c3d
+Homepage: ?
+Comment: file format ?
+Pkg-Description: ?
+
+Suggests: cath
+Homepage: http://www.cathdb.info
+Comment: used ?
+Pkg-Description: ?
+
+Suggests: ccp4
+Homepage: http://www.ccp4.ac.uk
+Pkg-Description: ?
+
+Suggests: cctbx
+WNPP: 679905
+Homepage: http://cctbx.sourceforge.net
+Vcs-Browser: http://anonscm.debian.org/git/debian-science/packages/cctbx.git
+Vcs-Git: git://anonscm.debian.org/debian-science/packages/cctbx.git
+Pkg-Description: CCTBX is a toolbox for developing crystallographic
+ software. It provides fundamental and advanced methods and algorithms
+ usefull in the scientific fields of crystallography[1], chemistry,
+ physics and biology. It also provides Libraries for general
+ scientific computing. The package is organized as a set of ISO C++
+ classes with Python bindings.
+
+Suggests: chart
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: chimera
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: chooch
+Homepage: ?
+Pkg-Description: ?
+
+Depends: clustalw
+
+Suggests: cn2coot
+Homepage: ?
+Pkg-Description: ?
+
+Suggests: cns_refine
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: cns_solve
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: coot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: crank
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: crystfel
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: das
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dialboxlinuxdriverdialbox_to_remove
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: dino
+
+Suggests: dna
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: domain-finder
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dps2ar
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dviewer
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: dyndom3d
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: edna
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: edna2html
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: elves
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: epmr
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: escet
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: evrouter
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: fit2d
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: fobscom
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: gnuplot
+
+Suggests: gramm
+Homepage: http://vakser.bioinformatics.ku.edu/main/resources_gramm.php
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: grasp
+Homepage: http://www.doe-mbi.ucla.edu/Software/GRASP.html
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: ha_ncs
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: harker
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hbplus
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hca
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hkl2map
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: hyss
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: imagej
+
+Suggests: imosflm
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: induced-rad-dam
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ipymol
+Homepage: http://www.sbgrid.org/news/newsletters/2007/11
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: ispyb-client
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: default-jdk
+Depends: jmol
+
+Suggests: labelit
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: lam
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: laue
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: liged
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ligplot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ligplus
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: lscale
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: maid
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: main
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: mar345
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: marutils
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: mercury
+Homepage: http://www.ccdc.cam.ac.uk/free_services/mercury
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: mgltools-pmv
+
+Suggests: mlfsom
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: molscriptmolscript-2.1.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: mosflm
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: msi
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: nuccyl
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: nucplot
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: onoono80ono90
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pgplot_5.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phaser
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phaser_sad
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phases
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: phenix
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pirate
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: plotmtv
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pointless
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Depends: povray
+
+Suggest: powder
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: promotif
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: pxpy
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: pymol
+
+Depends: python
+
+Suggests: raddose
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: rasmol
+
+Depends: raster3d
+
+Suggests: refmac
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: replace
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ribbons
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: ringer
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: rmerge
+Comment: hugins-tools ?
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: rosetta
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: rtools
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: saxs
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+
+Suggests: saxsview
+Homepage: http://saxsview.sourceforge.net
+License: GPL3+
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: scala_mpi
+Comment: scala packages ?
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: scsh-0.5.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: shakerr
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sharp
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: shelx
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sir
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: sir2002
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: snb2.2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: snow
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: solvesolve-2.08
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: stac-stac2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: strategy
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: surfnet
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: tcltkblt
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: testcase
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: test_exec
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: textal
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Depends: theseus
+
+Suggests: tools
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: tops
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: usf
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: viewhkl
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: wink
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: workflow-ds
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: workflow-executor
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xds
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xiaxia2
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xprep
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xrec
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+Suggests: xtalview
+Homepage: ?
+License: ?
+Pkg-Description: ?
+Comment: ?
+
+X-End-Category: PXSoft
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